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java.lang.Objectde.unihalle.informatik.Alida.operator.ALDOperator
de.unihalle.informatik.Alida.demo.ALDClusterExperiment
@ALDAOperator(genericExecutionMode=ALL, level=APPLICATION) public class ALDClusterExperiment
Demo operator to cluster experimental data.
First, optionally the data are normalized. Second, again optionally, the data are subjected to a PCA. Finally clustered via k-means.
Nested Class Summary |
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Nested classes/interfaces inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
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ALDOperator.HidingMode |
Field Summary |
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Fields inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
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completeDAG, name, operatorExecutionEventlistenerList, portHashAccess, verbose, versionProvider |
Constructor Summary | |
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ALDClusterExperiment()
Default constructor. |
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ALDClusterExperiment(ExperimentalData _experiment)
Constructor. |
Method Summary | |
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List<Set<Integer>> |
getClusters()
Get value of result. |
Boolean |
getDoNormalize()
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Boolean |
getDoPCA()
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ExperimentalData |
getExperiment()
Get value of experiment. |
ExperimentalData |
getNormalizedExperiment()
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protected void |
operate()
This method does the actual work and needs to be implemented by every subclass. |
void |
setDoNormalize(Boolean doNormalize)
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void |
setDoPCA(Boolean doPCA)
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void |
setExperiment(ExperimentalData value)
Set value of data. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public ALDClusterExperiment() throws ALDOperatorException
ALDOperatorException
public ALDClusterExperiment(ExperimentalData _experiment) throws ALDOperatorException
_experiment
- Experimental data
ALDOperatorException
Method Detail |
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protected void operate() throws ALDOperatorException, ALDProcessingDAGException
ALDOperator
operate
in class ALDOperator
ALDOperatorException
ALDProcessingDAGException
public List<Set<Integer>> getClusters()
public ExperimentalData getExperiment()
public void setExperiment(ExperimentalData value)
value
- New value of datapublic Boolean getDoNormalize()
public void setDoNormalize(Boolean doNormalize)
doNormalize
- the doNormalize to setpublic Boolean getDoPCA()
public void setDoPCA(Boolean doPCA)
doPCA
- the doPCA to setpublic ExperimentalData getNormalizedExperiment()
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