Operator for analyzing the movement pattern of cells given as a label image
label image
image sequence where each cell region has a unique label
intensity image
image sequence containing the cell intensities
only needed if intensities should be analyzed
pixel length, x-direction
physical length of a pixel in x-direction
pixel length, y-direction
physical length of a pixel in y-direction
unit x/y
unit of measurement for pixel size
time between frames
time elapsed between the acqusition of two consecutive frames
unit time
unit of measurement for the time
minimum track length
minimum length (number of consecutive frames) of a track to be considered for analysis
analyze intensities
should image intensities be analysized
requires an intensity image corresponding to the label image
analyze shapes
should cell shapes be analyzed
analyze trajectories
should cell trajectories be analyzed
show trajectory map
should a 2D map of the trajectories be created
Verbose
output some additional information