de.unihalle.informatik.Alida.demo
Class FilterExperimentalDataOp

java.lang.Object
  extended by de.unihalle.informatik.Alida.operator.ALDOperator
      extended by de.unihalle.informatik.Alida.demo.FilterExperimentalDataOp
All Implemented Interfaces:
ALDConfigurationValidator

@ALDAOperator(genericExecutionMode=ALL,
              level=APPLICATION)
public class FilterExperimentalDataOp
extends ALDOperator

Demo operator to filter experimental data. Remove features with low variance.

Author:
posch

Nested Class Summary
 
Nested classes/interfaces inherited from class de.unihalle.informatik.Alida.operator.ALDOperator
ALDOperator.HidingMode
 
Field Summary
private  ExperimentalData experiment
          Input data
private  ExperimentalData result
          Filtered experiment to be returned
 
Fields inherited from class de.unihalle.informatik.Alida.operator.ALDOperator
completeDAG, name, portHashAccess, verbose, versionProvider
 
Constructor Summary
FilterExperimentalDataOp()
          Default constructor.
FilterExperimentalDataOp(ExperimentalData _experiment)
          Constructor.
 
Method Summary
 ExperimentalData getExperiment()
          Get value of experiment.
 ExperimentalData getResult()
          Get value of result.
protected  void operate()
          This method does the actual work and needs to be implemented by every subclass.
 void setExperiment(ExperimentalData value)
          Set value of data.
 
Methods inherited from class de.unihalle.informatik.Alida.operator.ALDOperator
deserializeFromXmlFile, fieldContained, getALDPortHashAccessKey, getConstructionMode, getInInoutNames, getInInoutNames, getInNames, getInOutNames, getMissingRequiredInputs, getName, getNumParameters, getOutInoutNames, getOutNames, getParameter, getParameterDescriptor, getParameterNames, getSupplementalNames, getVerbose, getVersion, isConfigured, parametersToXmlObject, print, print, print, printInterface, printInterface, readHistory, readResolve, reinitializeParameterDescriptors, runOp, runOp, runOp, serializeToXmlFile, setConstructionMode, setName, setParameter, setParametersFromXml, setParametersFromXml, setVerbose, toStringVerbose, unconfiguredItems, validate, validateCustom, validateGeneric, writeHistory, writeHistory, writeHistory, writeParametersToXml
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

experiment

@Parameter(label="Experimental data",
           required=true,
           direction=IN,
           description="Experimental data to be filtered")
private ExperimentalData experiment
Input data


result

@Parameter(label="Filtered experiment",
           direction=OUT,
           description="Filtered experiment")
private transient ExperimentalData result
Filtered experiment to be returned

Constructor Detail

FilterExperimentalDataOp

public FilterExperimentalDataOp()
                         throws ALDOperatorException
Default constructor.

Throws:
ALDOperatorException

FilterExperimentalDataOp

public FilterExperimentalDataOp(ExperimentalData _experiment)
                         throws ALDOperatorException
Constructor.

Parameters:
experiment - Experimental data
Throws:
ALDOperatorException
Method Detail

getExperiment

public ExperimentalData getExperiment()
Get value of experiment. Explanation: Experimental data to be normalized.

Returns:
value of data

getResult

public ExperimentalData getResult()
Get value of result. Explanation: Normalized experiment.

Returns:
value of result

operate

protected void operate()
                throws ALDOperatorException,
                       ALDProcessingDAGException
Description copied from class: ALDOperator
This method does the actual work and needs to be implemented by every subclass.

Specified by:
operate in class ALDOperator
Throws:
ALDOperatorException
ALDProcessingDAGException

setExperiment

public void setExperiment(ExperimentalData value)
Set value of data. Explanation: Experimental data to be normalized.

Parameters:
value - New value of data