The Neuron Analyzer 2D application offers advanced functionality to analyse 2D fluorescense microscopy images of neurons.
neuron boundary detection based on active contours
...
visual and tabular result data presentation
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Input Directory
Directory of input image(s)
Define Molecules
Molecule names of each image channel
Nuclei Channel
Channel number of the nuclei image channel
Maximum spine Length
Maximum length to define a branch as spine (filopodia-like protrusion) [pixel]
Neurite Color
Color of the neurite regions in result image
Verbose
Output of additional messages on console is disabled/enabled
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Input Directory
Directory of input image(s)
Define Molecules
Molecule names of each image channel
Nuclei Channel
Channel number of the nuclei image channel
Maximum spine Length
Maximum length to define a branch as spine (filopodia-like protrusion) [pixel]
Neurite Mask Size
..
Maximum Fragment Distance
..
Niblack Constant
..
Detector Mode
..
External Energy
..
Alpha
..
Beta
..
Step Size
..
Resample Constant
..
Motion Fraction
..
Maximum Iterations
..
Neurite Color
Color of the neurite regions in result image
Verbose
Output of additional messages on console is disabled/enabled