ActinAnalyzer2D

This operator performs an unsupervised analysis of actin microfilament structures in sets of microscopy images. It takes as input a directory where the images are expected, and a set of segmentation masks showing the boundaries of individual cells in the images. The operator first calculates a set of texture features from the images and then clusters the feature vectors to identify structural patterns shared among different cells. Finally, each cell is characterized in terms of a distribution vector describing the appearance of various structural patterns in the cell. These vectors can then be used to analyze commonalities and differences between individual cells or groups of cells.

For more details about the operator and additional information on the parameters refer to its webpage: http://www2.informatik.uni-halle.de/agprbio/mitobo/index.php/Applications/ActinAnalyzer2D.


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Website: http://www.informatik.uni-halle.de/{alida,mitobo}
Contact: mitobo@informatik.uni-halle.de