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Packages that use MTBPolygon2DSet | |
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de.unihalle.informatik.MiToBo.apps.cells2D | |
de.unihalle.informatik.MiToBo.apps.cytoplasm2D | |
de.unihalle.informatik.MiToBo.apps.datatypes.cellImages | |
de.unihalle.informatik.MiToBo.apps.nuclei2D | |
de.unihalle.informatik.MiToBo.core.datatypes | Provides basic datatypes for MiToBo. |
de.unihalle.informatik.MiToBo.core.imageJ | Provides convenience classes for interaction with ImageJ system. |
de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.solver | |
de.unihalle.informatik.MiToBo.segmentation.snakes.datatypes | Provides basic datatypes for MiToBo explicit active contours (snakes). |
de.unihalle.informatik.MiToBo.segmentation.snakes.optimize | Provides classes for performing snake-based segmentation on images. |
de.unihalle.informatik.MiToBo.visualization.drawing | Provides operators to visualize data types. |
Uses of MTBPolygon2DSet in de.unihalle.informatik.MiToBo.apps.cells2D |
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Methods in de.unihalle.informatik.MiToBo.apps.cells2D with parameters of type MTBPolygon2DSet | |
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void |
Mica2D.setInitialSnakes(MTBPolygon2DSet f)
Specify set of initial snakes. |
Uses of MTBPolygon2DSet in de.unihalle.informatik.MiToBo.apps.cytoplasm2D |
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Fields in de.unihalle.informatik.MiToBo.apps.cytoplasm2D declared as MTBPolygon2DSet | |
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protected MTBPolygon2DSet |
CytoplasmAnalyzer2D.currentSnakes
Current set of snakes. |
protected MTBPolygon2DSet |
CytoplasmAnalyzer2D.initialSnakes
Initial snakes for cells, e.g. nuclei contours. |
protected MTBPolygon2DSet |
CytoplasmAnalyzer2D.resultSnakes
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Methods in de.unihalle.informatik.MiToBo.apps.cytoplasm2D with parameters of type MTBPolygon2DSet | |
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void |
CytoplasmAnalyzer2D.setInitialSnakes(MTBPolygon2DSet snakes)
Specify initial snakes. |
Constructors in de.unihalle.informatik.MiToBo.apps.cytoplasm2D with parameters of type MTBPolygon2DSet | |
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CytoplasmAnalyzer2D(MTBImage img,
MTBPolygon2DSet initS,
SnakeOptimizerCoupled snakeObj,
CytoplasmAnalyzer2D.DetectMode m,
int _maxLevels)
Default constructor. |
Uses of MTBPolygon2DSet in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages |
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Fields in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages declared as MTBPolygon2DSet | |
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protected MTBPolygon2DSet |
SegResult_Cytoplasm.cellContours
Set of detected cell boundaries. |
Methods in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages that return MTBPolygon2DSet | |
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MTBPolygon2DSet |
SegResult_Cytoplasm.getContours()
Returns extracted contours. |
Constructors in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages with parameters of type MTBPolygon2DSet | |
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SegResult_Cytoplasm(String imgName,
MTBPolygon2DSet conts,
MTBImageByte labels,
int count,
double avgsize)
Deprecated. |
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SegResult_Cytoplasm(String imgName,
MTBPolygon2DSet conts,
MTBImageByte labels,
int count,
int[] sizes,
double avgsize)
Default constructor. |
Uses of MTBPolygon2DSet in de.unihalle.informatik.MiToBo.apps.nuclei2D |
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Methods in de.unihalle.informatik.MiToBo.apps.nuclei2D that return MTBPolygon2DSet | |
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MTBPolygon2DSet |
NucleusSeparator2DPeakSearch_RegionSeparator.getEllipsoidSnakePrimer()
Returns set of initial snake ellipses. |
MTBPolygon2DSet |
NucleusSeparator2DPeakSearch.getNRSEllipsoidSnakePrimer()
Creates and returns a set of polygons as starting regions for snake analysis based on hypothesized ellipses from nucleus information |
MTBPolygon2DSet |
NucleusSeparator2DPeakSearch.getNRSVoronoidSnakePrimer()
Creates and returns a set of polygons as starting regions for the snakes. |
MTBPolygon2DSet |
NucleusSeparator2DPeakSearch.getSnakes()
Returns the result snakes. |
MTBPolygon2DSet |
NucleusSeparator2DPeakSearch_RegionSeparator.getVoronoidSnakePrimer()
Returns set of snake polygons resulting from Voronoi tesselation. |
Uses of MTBPolygon2DSet in de.unihalle.informatik.MiToBo.core.datatypes |
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Methods in de.unihalle.informatik.MiToBo.core.datatypes that return MTBPolygon2DSet | |
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MTBPolygon2DSet |
MTBPolygon2DSet.clone()
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Uses of MTBPolygon2DSet in de.unihalle.informatik.MiToBo.core.imageJ |
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Methods in de.unihalle.informatik.MiToBo.core.imageJ that return MTBPolygon2DSet | |
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MTBPolygon2DSet |
MTBPolygon2DSetROI.getPolygonSet()
Get 2D polygon set from Roi. |
MTBPolygon2DSet |
RoiManagerAdapter.getPolygonSetFromRoiFile(String file,
boolean asSnakes)
Reads an ImageJ roi file into a set of polygons/snakes. |
MTBPolygon2DSet |
RoiManagerAdapter.getPolygonSetFromRoiManager()
Reads ROI manager selections into a set of polygons/snakes. |
Methods in de.unihalle.informatik.MiToBo.core.imageJ with parameters of type MTBPolygon2DSet | |
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void |
RoiManagerAdapter.addPolygonsToRoiManager(MTBPolygon2DSet polys)
Adds a set of polygons to the ROI manager. |
Constructors in de.unihalle.informatik.MiToBo.core.imageJ with parameters of type MTBPolygon2DSet | |
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MTBPolygon2DSetROI(MTBPolygon2DSet polySet,
String roiLabel)
Constructor to create a new Roi-Manager-Object, based on a MTBPolygon2DSet. |
Uses of MTBPolygon2DSet in de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.solver |
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Fields in de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.solver declared as MTBPolygon2DSet | |
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protected MTBPolygon2DSet |
LevelsetSolverPDE.invisibleRegionSet
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Uses of MTBPolygon2DSet in de.unihalle.informatik.MiToBo.segmentation.snakes.datatypes |
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Methods in de.unihalle.informatik.MiToBo.segmentation.snakes.datatypes that return MTBPolygon2DSet | |
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static MTBPolygon2DSet |
MTBSnake.convertRegionsToSnakes(MTBImage image)
Converts the regions of a label/binary image into a set of snakes. |
Uses of MTBPolygon2DSet in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize |
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Fields in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize declared as MTBPolygon2DSet | |
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protected MTBPolygon2DSet |
SnakeOptimizer.initialSnakes
Set of initial snake contours. |
protected MTBPolygon2DSet |
SnakeOptimizer.outSnakes
Result contours. |
Fields in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize with type parameters of type MTBPolygon2DSet | |
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protected Vector<MTBPolygon2DSet> |
SnakeOptimizer.intermediateResults
Set of intermediate segmentation results, required for stack generation. |
Methods in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize that return MTBPolygon2DSet | |
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MTBPolygon2DSet |
SnakeOptimizerSingle.getCurrentSnakes()
Returns a set with current snake(!). |
MTBPolygon2DSet |
SnakeOptimizerCoupled.getCurrentSnakes()
Returns a copy of the set of current snakes. |
abstract MTBPolygon2DSet |
SnakeOptimizer.getCurrentSnakes()
Returns a copy of the current snake(s). |
MTBPolygon2DSet |
SnakeOptimizer.getInitialSnakes()
Returns initial snake. |
MTBPolygon2DSet |
SnakeOptimizer.getResultSnakes()
Returns the set of result snakes. |
Methods in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize with parameters of type MTBPolygon2DSet | |
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void |
SnakeOptimizer.setInitialSnakes(MTBPolygon2DSet inS)
Specify initial snakes. |
Constructors in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize with parameters of type MTBPolygon2DSet | |
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SnakeOptimizerCoupled(MTBImage img,
MTBPolygon2DSet initSnakes,
SnakeOptimizerSingle sopt,
boolean[] activeArray)
Default constructor. |
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SnakeOptimizerSingleVarCalc(MTBImage img,
MTBPolygon2DSet initSnake,
MTBSet_SnakeEnergyDerivable energs,
MTBGammaUpdate gamUpdater,
Double gammas,
MTBTermination tc,
Boolean resample,
Double segLength)
Default constructor with parameters. |
Uses of MTBPolygon2DSet in de.unihalle.informatik.MiToBo.visualization.drawing |
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Constructors in de.unihalle.informatik.MiToBo.visualization.drawing with parameters of type MTBPolygon2DSet | |
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DrawPolygon2DSet(MTBPolygon2DSet ps)
Simple constructor. |
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DrawPolygon2DSet(MTBPolygon2DSet ps,
MTBImageRGB img)
Complete constructor. |
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