Uses of Class
de.unihalle.informatik.MiToBo.core.datatypes.MTBRegion2D

Packages that use MTBRegion2D
de.unihalle.informatik.MiToBo.apps.particles2D   
de.unihalle.informatik.MiToBo.apps.singleCellTracking2D   
de.unihalle.informatik.MiToBo.core.datatypes Provides basic datatypes for MiToBo. 
de.unihalle.informatik.MiToBo.core.datatypes.neurites   
de.unihalle.informatik.MiToBo.segmentation.levelset.nonPDE   
de.unihalle.informatik.MiToBo.segmentation.snakes.datatypes Provides basic datatypes for MiToBo explicit active contours (snakes). 
de.unihalle.informatik.MiToBo.visualization.drawing Provides operators to visualize data types. 
 

Uses of MTBRegion2D in de.unihalle.informatik.MiToBo.apps.particles2D
 

Methods in de.unihalle.informatik.MiToBo.apps.particles2D with parameters of type MTBRegion2D
protected  Integer ParticleDetectorUWT2D.getLabelMostInRegion(MTBRegion2D reg, MTBImage img)
           
protected  Vector<Integer> ParticleDetectorUWT2D.getLabelsInRegion(MTBRegion2D reg, MTBImage img)
           
protected  double ParticleDetectorUWT2D.logPofRegion(MTBRegion2D reg, MTBImage img, MTBImageHistogram cumHist)
           
protected  double ParticleDetectorUWT2D.meanOfRegion(MTBRegion2D reg, MTBImage img)
           
 

Method parameters in de.unihalle.informatik.MiToBo.apps.particles2D with type arguments of type MTBRegion2D
protected  MTBImage ParticleDetectorUWT2D.regionsToBinImage(MTBImage img, MTBImage mask, Vector<MTBRegion2D> regs)
          Create binary image from a set of regions.
 

Uses of MTBRegion2D in de.unihalle.informatik.MiToBo.apps.singleCellTracking2D
 

Methods in de.unihalle.informatik.MiToBo.apps.singleCellTracking2D that return MTBRegion2D
static MTBRegion2D LabelAreasToRegions.getBackground(MTBImage frame, int bgLabel)
           
 

Uses of MTBRegion2D in de.unihalle.informatik.MiToBo.core.datatypes
 

Fields in de.unihalle.informatik.MiToBo.core.datatypes declared as MTBRegion2D
protected  MTBRegion2D MTBTreeNodeRegion2D.m_reg
          2D region object.
 

Fields in de.unihalle.informatik.MiToBo.core.datatypes with type parameters of type MTBRegion2D
protected  Vector<MTBRegion2D> MTBRegion2DSet.regionSet
          The set of regions represented as a Vector.
 

Methods in de.unihalle.informatik.MiToBo.core.datatypes that return MTBRegion2D
 MTBRegion2D MTBRegion2D.clone()
          Override java.lang.Object.clone() to create and return a copy of this object.
static MTBRegion2D MTBRegion2D.createRandomRegion2D(int xSize, int ySize, int maxArea, Random rndGen)
          Create a random connected 2D region of size maxArea in a hypothetical image of a random size between 1 and maxArea.
 MTBRegion2D MTBRegion2DSet.elementAt(int i)
          Get a region by index
 MTBRegion2D MTBRegion2DSet.get(int i)
          Get a region by index
 MTBRegion2D MTBTreeNodeRegion2D.getRegion()
          Return the 2D region.
 MTBRegion2D MTBRegion2D.getRegion()
          Get a Region2D copy of this object.
 MTBRegion2D MTBContour2D.getRegion(int imageSizeX, int imageSizeY)
          Method to get the included region in a 2D contour as Region2D object.
 MTBRegion2D MTBRegion2D.join(MTBRegion2D reg)
          Join a region with this region.
 

Methods in de.unihalle.informatik.MiToBo.core.datatypes that return types with arguments of type MTBRegion2D
 Iterator<MTBRegion2D> MTBRegion2DSet.iterator()
           
 

Methods in de.unihalle.informatik.MiToBo.core.datatypes with parameters of type MTBRegion2D
 boolean MTBRegion2DSet.add(MTBRegion2D region)
          Append a region (at the end) to the set of regions.
 MTBRegion2D MTBRegion2D.join(MTBRegion2D reg)
          Join a region with this region.
 void MTBRegion2DSet.remove(MTBRegion2D regionToRemove)
          Delete the given region object from the set, if contained.
 void MTBRegion2DSet.setElementAt(MTBRegion2D region, int i)
          Set the i-th region from the set
 

Constructors in de.unihalle.informatik.MiToBo.core.datatypes with parameters of type MTBRegion2D
MTBTreeNodeRegion2D(MTBRegion2D reg)
          Construct a new MTBTreeNodeRegion2D from the given 2D region object.
 

Constructor parameters in de.unihalle.informatik.MiToBo.core.datatypes with type arguments of type MTBRegion2D
MTBRegion2DSet(Vector<MTBRegion2D> regions, double _xMin, double _yMin, double _xMax, double _yMax)
          Construct an empty set of regions with given extent of domain
 

Uses of MTBRegion2D in de.unihalle.informatik.MiToBo.core.datatypes.neurites
 

Methods in de.unihalle.informatik.MiToBo.core.datatypes.neurites that return MTBRegion2D
 MTBRegion2D MTBNeurite2D.getNeuriteRegion()
          Get neurite corresponding region.
 MTBRegion2D MTBNeurite2D.getNeuriteShaftRegion()
          Get neurite shaft region (without growth cone).
 

Constructors in de.unihalle.informatik.MiToBo.core.datatypes.neurites with parameters of type MTBRegion2D
MTBNeurite2D(MTBNeuriteSkelGraph _neuriteGraph, Vector<Vector<Point2D.Double>> _featurePoints, Vector<Vector<Line2D.Double>> _featureLines, MTBRegion2D _neuriteRegion, int _maxSpineLength, int[] _neuriteShaftLengths, Vector<Vector<Double>> _neuriteWidths)
          Constructor to generate a new neurite object.
 

Uses of MTBRegion2D in de.unihalle.informatik.MiToBo.segmentation.levelset.nonPDE
 

Constructor parameters in de.unihalle.informatik.MiToBo.segmentation.levelset.nonPDE with type arguments of type MTBRegion2D
MTBLevelsetMembership(int sizeX, int sizeY, Vector<MTBRegion2D> regions, MTBImage invalidImg, boolean multiphase)
          Constructor for given size which is initialized from a list of 2D regions for a 2D level set function.
 

Uses of MTBRegion2D in de.unihalle.informatik.MiToBo.segmentation.snakes.datatypes
 

Methods in de.unihalle.informatik.MiToBo.segmentation.snakes.datatypes with parameters of type MTBRegion2D
static MTBSnake MTBSnake.convertRegionToSnake(MTBRegion2D region)
          Converts a region into a snake.
 

Uses of MTBRegion2D in de.unihalle.informatik.MiToBo.visualization.drawing
 

Methods in de.unihalle.informatik.MiToBo.visualization.drawing with parameters of type MTBRegion2D
protected  void DrawTracks2D.drawSpot(MTBImage img, MTBRegion2D reg, int t, int c, int color)
          Draw region to an image at time=t and channel=c with specified color.
protected  void DrawTracks2D.drawSqare(MTBImage img, MTBRegion2D reg, int t, int c, int color, int radius)
          Draw square to an image at time=t and channel=c with specified color and size=2*radius+1.
 



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