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java.lang.Objectde.unihalle.informatik.Alida.operator.ALDOperator
de.unihalle.informatik.MiToBo.core.operator.MTBOperator
de.unihalle.informatik.MiToBo.apps.singleCellTracking2D.MigrationAnalyzer
@ALDAOperator(genericExecutionMode=ALL, level=STANDARD) public class MigrationAnalyzer
Operator for analyzing the movement pattern of cells as well as changes in morphology and fluorescence intensity
Nested Class Summary |
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Nested classes/interfaces inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
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de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode |
Field Summary |
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Fields inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
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completeDAG, name, operatorExecutionEventlistenerList, portHashAccess, verbose, versionProvider |
Constructor Summary | |
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MigrationAnalyzer()
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MigrationAnalyzer(MTBImage labelImg)
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MigrationAnalyzer(MTBImage labelImg,
MTBImage maskImg)
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Method Summary | |
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void |
analyzeIntensities(boolean analyzeIntensities)
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void |
analyzeShapes(boolean analyzeShapes)
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void |
analyzeTrajectories(boolean analyzeTrajectories)
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void |
includeMask(boolean include)
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void |
operate()
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void |
setDeltaT(double deltaT)
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void |
setDeltaX(double deltaX)
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void |
setDeltaY(double deltaY)
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void |
setFactor(double factor)
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void |
setIntensityImage(MTBImage intImg)
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void |
setMinTrackLength(int minTrackLength)
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void |
setUnitT(String unitT)
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void |
setUnitXY(String unitXY)
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void |
showOverlayImage(boolean showOverlay)
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void |
showTrajectoryMap(boolean showTrajectories)
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Methods inherited from class de.unihalle.informatik.MiToBo.core.operator.MTBOperator |
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readResolve |
Methods inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
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addOperatorExecutionProgressEventListener, fieldContained, fireOperatorExecutionProgressEvent, getALDPortHashAccessKey, getConstructionMode, getHidingMode, getInInoutNames, getInInoutNames, getInNames, getInOutNames, getMissingRequiredInputs, getName, getNumParameters, getOutInoutNames, getOutNames, getParameter, getParameterDescriptor, getParameterNames, getSupplementalNames, getVerbose, getVersion, handleOperatorExecutionProgressEvent, isConfigured, print, print, print, printInterface, printInterface, readHistory, reinitializeParameterDescriptors, removeOperatorExecutionProgressEventListener, runOp, runOp, runOp, setConstructionMode, setHidingMode, setName, setParameter, setVerbose, toStringVerbose, unconfiguredItems, validate, validateCustom, validateGeneric, writeHistory, writeHistory, writeHistory |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public MigrationAnalyzer() throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
public MigrationAnalyzer(MTBImage labelImg) throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
public MigrationAnalyzer(MTBImage labelImg, MTBImage maskImg) throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
Method Detail |
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public void operate() throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException, de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException
operate
in class de.unihalle.informatik.Alida.operator.ALDOperator
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException
public void setIntensityImage(MTBImage intImg)
intImg
- public void setDeltaX(double deltaX)
deltaX
- public void setDeltaY(double deltaY)
deltaY
- public void setDeltaT(double deltaT)
deltaT
- public void setUnitXY(String unitXY)
unitXY
- public void setUnitT(String unitT)
unitT
- public void setMinTrackLength(int minTrackLength)
minTrackLength
- public void includeMask(boolean include)
public void setFactor(double factor)
public void analyzeTrajectories(boolean analyzeTrajectories)
analyzeTrajectories
- public void analyzeShapes(boolean analyzeShapes)
analyzeShapes
- public void analyzeIntensities(boolean analyzeIntensities)
analyzeIntensities
- public void showTrajectoryMap(boolean showTrajectories)
showTrajectories
- public void showOverlayImage(boolean showOverlay)
showOverlay
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