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java.lang.Objectde.unihalle.informatik.Alida.operator.ALDOperator
de.unihalle.informatik.MiToBo.core.operator.MTBOperator
de.unihalle.informatik.MiToBo.apps.scratchAssay.ScratchAssaySVMTrainer
@ALDAOperator(genericExecutionMode=SWING, level=STANDARD, allowBatchMode=false) public class ScratchAssaySVMTrainer
class for training and cross validating a support vector machine for classification of scratch assay
images into images containing a scratch and those that don't
Nested Class Summary | |
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static class |
ScratchAssaySVMTrainer.KERNEL_TYPE
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static class |
ScratchAssaySVMTrainer.ScratchOrientation
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static class |
ScratchAssaySVMTrainer.ValidationMethod
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Nested classes/interfaces inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
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de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode |
Field Summary |
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Fields inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
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completeDAG, name, operatorExecutionEventlistenerList, portHashAccess, verbose, versionProvider |
Constructor Summary | |
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ScratchAssaySVMTrainer()
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ScratchAssaySVMTrainer(String posDir,
String negDir,
int sigma,
int entropyFilterSize,
boolean isHorizontal,
int maxIter)
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Method Summary | |
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void |
operate()
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void |
setSVMParameters(libsvm.svm_parameter param)
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Methods inherited from class de.unihalle.informatik.MiToBo.core.operator.MTBOperator |
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readResolve |
Methods inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
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addOperatorExecutionProgressEventListener, fieldContained, fireOperatorExecutionProgressEvent, getALDPortHashAccessKey, getConstructionMode, getHidingMode, getInInoutNames, getInInoutNames, getInNames, getInOutNames, getMissingRequiredInputs, getName, getNumParameters, getOutInoutNames, getOutNames, getParameter, getParameterDescriptor, getParameterNames, getSupplementalNames, getVerbose, getVersion, handleOperatorExecutionProgressEvent, isConfigured, print, print, print, printInterface, printInterface, readHistory, reinitializeParameterDescriptors, removeOperatorExecutionProgressEventListener, runOp, runOp, runOp, setConstructionMode, setHidingMode, setName, setParameter, setVerbose, toStringVerbose, unconfiguredItems, validate, validateCustom, validateGeneric, writeHistory, writeHistory, writeHistory |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public ScratchAssaySVMTrainer() throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
public ScratchAssaySVMTrainer(String posDir, String negDir, int sigma, int entropyFilterSize, boolean isHorizontal, int maxIter) throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException
posDir
- directory containing positive samplesnegDir
- directory containing negative samplessigma
- standard deviation of gauss filterentropyFilterSize
- size of entropy filter maskisHorizontal
- is scratch horizontally oriented (assumed to be vertically oriented else)maxIter
- maximum number of iterations for level set segmentation
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
Method Detail |
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public void operate() throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException, de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException
operate
in class de.unihalle.informatik.Alida.operator.ALDOperator
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException
public void setSVMParameters(libsvm.svm_parameter param)
param
-
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