Uses of Class
de.unihalle.informatik.MiToBo.core.datatypes.MTBRegion2DSet

Packages that use MTBRegion2DSet
de.unihalle.informatik.MiToBo.apps.datatypes.cellImages   
de.unihalle.informatik.MiToBo.apps.neurites2D   
de.unihalle.informatik.MiToBo.apps.nuclei2D   
de.unihalle.informatik.MiToBo.apps.particles2D   
de.unihalle.informatik.MiToBo.apps.singleCellTracking2D   
de.unihalle.informatik.MiToBo.core.datatypes Provides basic datatypes for MiToBo. 
de.unihalle.informatik.MiToBo.core.datatypes.neurites   
de.unihalle.informatik.MiToBo.core.imageJ Provides convenience classes for interaction with ImageJ system. 
de.unihalle.informatik.MiToBo.segmentation.basics   
de.unihalle.informatik.MiToBo.segmentation.contours.extraction Provides classes for performing contour extractions from regions or other image elements. 
de.unihalle.informatik.MiToBo.segmentation.levelset.nonPDE   
de.unihalle.informatik.MiToBo.segmentation.regions.convert   
de.unihalle.informatik.MiToBo.segmentation.regions.labeling Provides classes to perform region labeling to find connected components in binarized images. 
de.unihalle.informatik.MiToBo.visualization.drawing Provides operators to visualize data types. 
 

Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages
 

Fields in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages declared as MTBRegion2DSet
protected  MTBRegion2DSet SegResult_Nuclei.nucleiRegions
          Set of detected regions.
protected  MTBRegion2DSet SegResult_Particles.particleRegions
          List of detected regions.
 

Methods in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages that return MTBRegion2DSet
 MTBRegion2DSet SegResult_Nuclei.getNucleiRegions()
          Returns set of detected regions.
 

Methods in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages with parameters of type MTBRegion2DSet
 void SegResult_Nuclei.setNucleiRegions(MTBRegion2DSet regs)
          Specify set of regions.
 

Constructors in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages with parameters of type MTBRegion2DSet
SegResult_Nuclei(String imgName, int channel, MTBImageByte mask, MTBImage labels, MTBRegion2DSet regs, int count, double avgsize)
          Default constructor.
SegResult_Particles(String imgName, int ch, MTBRegion2DSet regions, MTBImageByte mask, int count, double avgsize)
          Default constructor.
 

Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.apps.neurites2D
 

Methods in de.unihalle.informatik.MiToBo.apps.neurites2D that return MTBRegion2DSet
 MTBRegion2DSet NeuriteParticleDetector2D.getDetectedParticles()
          Get regions of detected particles.
 

Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.apps.nuclei2D
 

Methods in de.unihalle.informatik.MiToBo.apps.nuclei2D that return MTBRegion2DSet
 MTBRegion2DSet NucleusSeparator2DPeakSearch_RegionSeparator.getCandidates()
          Returns set of detected candidate peaks.
 MTBRegion2DSet NucleusSeparator2DPeakSearch_RegionSeparator.getInputRegs()
          Get set of input regions.
 MTBRegion2DSet NucleusSeparator2DPeakSearch.getNRSCandidates()
          Returns possible peak locations from NucleusRegionSeperator.
 MTBRegion2DSet[] NucleusSeparator2DPeakSearch.getNRSResultAreas()
          Returns set of result regions from region separator.
 MTBRegion2DSet NucleusSeparator2DPeakSearch.getNRSResultCenters()
          Returns set of detected region centers from region separator.
 MTBRegion2DSet NuclearParticleDetector2D.getNucleiRegions()
          Get detected nuclei regions.
 MTBRegion2DSet NucleusSeparator2DPeakSearch.getOtsuRegs()
          Returns set of regions resulting from Otsu thresholding.
 MTBRegion2DSet NuclearParticleDetector2D.getParticleRegions()
          Get detected particle regions.
 MTBRegion2DSet[] NucleusSeparator2DPeakSearch_RegionSeparator.getRegCenters()
          Returns the centers of the nuclei sorted to their original regions.
 MTBRegion2DSet[] NucleusSeparator2DPeakSearch_RegionSeparator.getResultAreas()
          Returns separated regions sorted according to original regions.
 MTBRegion2DSet NucleusSeparator2DPeakSearch_RegionSeparator.getResultCenters()
          Returns centers of result regions.
 

Methods in de.unihalle.informatik.MiToBo.apps.nuclei2D with parameters of type MTBRegion2DSet
 void NucleusSeparator2DPeakSearch_RegionSeparator.setInputRegs(MTBRegion2DSet _inputRegions)
          Specify set of input regions.
 

Constructors in de.unihalle.informatik.MiToBo.apps.nuclei2D with parameters of type MTBRegion2DSet
NucleusSeparator2DPeakSearch_RegionSeparator(MTBRegion2DSet oset)
          Constructor with region set.
 

Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.apps.particles2D
 

Methods in de.unihalle.informatik.MiToBo.apps.particles2D that return MTBRegion2DSet
 MTBRegion2DSet ParticleDetectorUWT2D.getResults()
          Get resulting regions (each detetection corresponds to a region)
 

Methods in de.unihalle.informatik.MiToBo.apps.particles2D with parameters of type MTBRegion2DSet
protected  MTBImage ParticleDetectorUWT2D.labelImage(MTBImage img, MTBRegion2DSet regs)
           
protected  MTBImage ParticleDetectorUWT2D.processedRegionsToBinImage(MTBImage img, MTBRegion2DSet regs, int _minRegionSize)
          Create a binary image from given regions.
protected  void ParticleDetectorUWT2D.setResults(MTBRegion2DSet detectedRegions)
          Set detected regions
 

Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.apps.singleCellTracking2D
 

Methods in de.unihalle.informatik.MiToBo.apps.singleCellTracking2D that return MTBRegion2DSet
static MTBRegion2DSet LabelAreasToRegions.getRegions(MTBImage frame)
           
static MTBRegion2DSet LabelAreasToRegions.getRegions(MTBImage frame, int bgLabel)
           
 

Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.core.datatypes
 

Methods in de.unihalle.informatik.MiToBo.core.datatypes that return MTBRegion2DSet
 MTBRegion2DSet MTBRegion2DSet.clone()
           
 MTBRegion2DSet MTBRegion2DSetBag.get(int idx)
           
 MTBRegion2DSet MTBRegion2DSetBag.remove(int idx)
          Remove a region set from this bag by its index
 MTBRegion2DSet MTBRegion2DSet.selectLargeRegions(int minSize)
           
 

Methods in de.unihalle.informatik.MiToBo.core.datatypes that return types with arguments of type MTBRegion2DSet
 Iterator<MTBRegion2DSet> MTBRegion2DSetBag.iterator()
           
 

Methods in de.unihalle.informatik.MiToBo.core.datatypes with parameters of type MTBRegion2DSet
 void MTBRegion2DSetBag.add(MTBRegion2DSet regionset)
          Add a region set to this bag
 boolean MTBRegion2DSetBag.remove(MTBRegion2DSet regionset)
          Remove a region set from this bag
 void MTBRegion2DSetBag.set(int idx, MTBRegion2DSet regionset)
           
 

Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.core.datatypes.neurites
 

Methods in de.unihalle.informatik.MiToBo.core.datatypes.neurites that return MTBRegion2DSet
 MTBRegion2DSet MTBNeurite2D.getGrowthConeRegions()
          Get regions of the separated growth cones.
 

Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.core.imageJ
 

Methods in de.unihalle.informatik.MiToBo.core.imageJ that return MTBRegion2DSet
 MTBRegion2DSet MTBRegion2DSetROI.getRegionSet()
          Get 2D region set from Roi.
 MTBRegion2DSet RoiManagerAdapter.getRegionSetFromRoiFile(String file)
          Reads an ImageJ roi file into a set of regions.
 MTBRegion2DSet RoiManagerAdapter.getRegionSetFromRoiFile(String file, double xMin, double yMin, double xMax, double yMax)
          Reads an ImageJ roi file into a set of regions.
 MTBRegion2DSet RoiManagerAdapter.getRegionSetFromRoiManager()
          Reads a ROI manager selection into a set of regions.
 

Methods in de.unihalle.informatik.MiToBo.core.imageJ with parameters of type MTBRegion2DSet
 void RoiManagerAdapter.addRegionsToRoiManager(MTBRegion2DSet regs)
          Adds a set of 2D regions to the ROI manager.
 

Constructors in de.unihalle.informatik.MiToBo.core.imageJ with parameters of type MTBRegion2DSet
MTBRegion2DSetROI(MTBRegion2DSet regSet, String roiLabel)
          Constructor to create a new Roi-Manager-Object, based on a MTBRegion2DSet.
 

Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.segmentation.basics
 

Fields in de.unihalle.informatik.MiToBo.segmentation.basics declared as MTBRegion2DSet
protected  MTBRegion2DSet SegmentationInitializer.regionSet
           
 

Methods in de.unihalle.informatik.MiToBo.segmentation.basics that return MTBRegion2DSet
 MTBRegion2DSet SegmentationInitializer.getRegionSet()
          Get the region set.
 

Methods in de.unihalle.informatik.MiToBo.segmentation.basics with parameters of type MTBRegion2DSet
 void SegmentationInitializer.setRegionSet(MTBRegion2DSet _regionSet)
          Set the region set.
 

Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.segmentation.contours.extraction
 

Methods in de.unihalle.informatik.MiToBo.segmentation.contours.extraction that return MTBRegion2DSet
 MTBRegion2DSet ContourOnLabeledComponents.getInputRegions()
          Get reference to the input regions.
 

Methods in de.unihalle.informatik.MiToBo.segmentation.contours.extraction with parameters of type MTBRegion2DSet
protected  MTBContour2DSet ContourOnLabeledComponents.getOuterContours(MTBRegion2DSet theRegions, MTBImageByte theImage)
          Calculate the outer contours of the given regions in a image.
 void ContourOnLabeledComponents.setInputRegions(MTBRegion2DSet inRegions)
          Set reference to the the input regions.
 void BordersOnLabeledComponents.setInputRegions(MTBRegion2DSet inRegions)
          Set input regions.
 

Constructors in de.unihalle.informatik.MiToBo.segmentation.contours.extraction with parameters of type MTBRegion2DSet
BordersOnLabeledComponents(MTBImageByte inImg, MTBRegion2DSet inRegions, MTBBorder2D.BorderConnectivity con, BordersOnLabeledComponents.BorderType type, int minLength)
          Constructor.
ContourOnLabeledComponents(MTBImageByte inImg, MTBRegion2DSet inRegions, ContourOnLabeledComponents.ContourType type, int length)
          Constructor.
ContourOnLabeledComponents(MTBRegion2DSet inRegions, ContourOnLabeledComponents.ContourType type, int length)
          Constructor.
 

Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.segmentation.levelset.nonPDE
 

Constructors in de.unihalle.informatik.MiToBo.segmentation.levelset.nonPDE with parameters of type MTBRegion2DSet
MTBLevelsetMembership(int sizeX, int sizeY, MTBRegion2DSet regions, MTBImage invalidImg, boolean multiphase)
          Constructor for given size which is initialized from a MTBRegion2DSet for a 2D level set function.
 

Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.segmentation.regions.convert
 

Methods in de.unihalle.informatik.MiToBo.segmentation.regions.convert that return MTBRegion2DSet
 MTBRegion2DSet Region2DSetFromLabelimage.getRegionSet()
           
 

Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.segmentation.regions.labeling
 

Methods in de.unihalle.informatik.MiToBo.segmentation.regions.labeling that return MTBRegion2DSet
 MTBRegion2DSet LabelComponentsSequential.getResultingRegions()
          Get the resulting regions.
protected  MTBRegion2DSet LabelComponentsSequential.labelComponents(MTBImage img, boolean diagonalNeighbors)
          Sequential component labeling
 

Methods in de.unihalle.informatik.MiToBo.segmentation.regions.labeling with parameters of type MTBRegion2DSet
protected  void LabelComponentsSequential.setResultingRegions(MTBRegion2DSet regions)
          Attach the vector of resulting regions.
 

Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.visualization.drawing
 

Methods in de.unihalle.informatik.MiToBo.visualization.drawing that return MTBRegion2DSet
 MTBRegion2DSet DrawRegion2DSet.getInputRegions()
          Get the regions that have to be drawn
 

Methods in de.unihalle.informatik.MiToBo.visualization.drawing with parameters of type MTBRegion2DSet
 void DrawRegion2DSet.setInputRegions(MTBRegion2DSet regions)
          Set the input regions to be drawn
 

Constructors in de.unihalle.informatik.MiToBo.visualization.drawing with parameters of type MTBRegion2DSet
DrawRegion2DSet(DrawRegion2DSet.DrawType dtype, MTBRegion2DSet regions)
          Simple constructor to create the most common region image types: see DrawType
DrawRegion2DSet(DrawRegion2DSet.DrawType dtype, MTBRegion2DSet regions, Boolean cloneTargetImage)
          Simple constructor to create the most common region image types: see DrawType
DrawRegion2DSet(DrawRegion2DSet.DrawType dtype, MTBRegion2DSet regions, MTBImage targetimage)
          Simple constructor to draw the most common region image types to a given image:
 



Copyright © 2010–2015 Martin Luther University Halle-Wittenberg. All rights reserved.