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Uses of MTBImage in de.unihalle.informatik.MiToBo.apps.cells2D |
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Constructors in de.unihalle.informatik.MiToBo.apps.cells2D with parameters of type MTBImage | |
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Mica2D(MTBImage img,
int nc,
int cc)
Default constructor. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.apps.cytoplasm2D |
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Fields in de.unihalle.informatik.MiToBo.apps.cytoplasm2D declared as MTBImage | |
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protected MTBImage |
CytoplasmAnalyzer2D.inImg
Single-layer input image to be processed. |
Methods in de.unihalle.informatik.MiToBo.apps.cytoplasm2D with parameters of type MTBImage | |
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void |
CytoplasmAnalyzer2D.setInputImage(MTBImage img)
Specify input image. |
Constructors in de.unihalle.informatik.MiToBo.apps.cytoplasm2D with parameters of type MTBImage | |
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CytoplasmAnalyzer2D(MTBImage img,
MTBPolygon2DSet initS,
SnakeOptimizerCoupled snakeObj,
CytoplasmAnalyzer2D.DetectMode m,
int _maxLevels)
Default constructor. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages |
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Fields in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages declared as MTBImage | |
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protected MTBImage |
SegResult_Nuclei.labelImage
Gray-scale label image of nuclei regions. |
Methods in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages that return MTBImage | |
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MTBImage |
SegResult_Nuclei.getLabelImage()
Returns label image of detected nuclei. |
Methods in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages with parameters of type MTBImage | |
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void |
SegResult_Nuclei.setLabelImage(MTBImage limg)
Set label image of detected nuclei. |
Constructors in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages with parameters of type MTBImage | |
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SegResult_Nuclei(String imgName,
int channel,
MTBImageByte mask,
MTBImage labels,
MTBRegion2DSet regs,
int count,
double avgsize)
Default constructor. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.apps.neurites2D |
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Methods in de.unihalle.informatik.MiToBo.apps.neurites2D that return MTBImage | |
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MTBImage |
NeuriteDetector2DAlgos.getInputImage()
Get multichannel fluorescence input image. |
MTBImage |
NeuriteMolProfExtractor2D.getMoelculeImg()
Get the input image with the fluorescence labeled molecules. |
Methods in de.unihalle.informatik.MiToBo.apps.neurites2D with parameters of type MTBImage | |
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void |
NeuriteParticleDetector2D.setParticleImage(MTBImage particleImage)
Set particle image for particle detector. |
Constructors in de.unihalle.informatik.MiToBo.apps.neurites2D with parameters of type MTBImage | |
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NeuriteDetector2DAlgos(MTBImage _inputImage,
int _nucleiChannel,
int _nucleusSize,
double _nucleusRation,
int[] _neuronChannels,
double _niblackConstant,
int _maxFragmentDistance,
String _pathToFile,
String _resultDir,
NeuriteDetector2DAlgos.DetectorExternalEnergy _energyLabel,
double _alpha,
double _beta,
double _stepSize,
double _motionFraction,
int _maxIterations,
int _resampleConstant,
int _maxSpineLength,
int _neuriteMaskSize,
Color _neuriteColor,
MTBTableModel _table,
Boolean _verbose,
org.rosuda.JRI.Rengine _re)
Constructor. |
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NeuriteMolProfExtractor2D(MTBImage _moleculeImage,
Integer[] _moleculeChannels,
MTBNeurite2DSet _neuriteSet,
Boolean _verbose)
Constructor to create a new neurite profile extraction operator. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.apps.nuclei2D |
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Fields in de.unihalle.informatik.MiToBo.apps.nuclei2D declared as MTBImage | |
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protected MTBImage |
NucleusSeparator2DAlgos.inputImg
Input image to be processed. |
protected MTBImage |
NucleusSeparator2DAlgos.labelImg
Input image to process. |
Methods in de.unihalle.informatik.MiToBo.apps.nuclei2D that return MTBImage | |
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MTBImage |
NucleusSeparator2DPeakSearch_RegionSeparator.getDistImg()
Returns calculated distance map. |
MTBImage |
NuclearParticleDetector2D.getInputImage()
Get input image. |
MTBImage |
NucleusSeparator2DBeamCut.getLabelImg()
Get value of labelImg. |
MTBImage |
NucleusSeparator2DPeakSearch.getNRSDistImg()
Returns distance image calculated intermediately. |
MTBImage |
NucleusDetector2D.getResultImage()
Get the result label image. |
Methods in de.unihalle.informatik.MiToBo.apps.nuclei2D with parameters of type MTBImage | |
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void |
NucleusSeparator2DPeakSearch.setInImg(MTBImage inImg)
Specify gray-scale input image. |
void |
NucleusSeparator2DAlgos.setInputGrayScaleImage(MTBImage img)
Specify input gray-scale image. |
void |
NucleusSeparator2D.setInputGrayScaleImage(MTBImage img)
Specify input gray-scale image. |
void |
NucleusDetector2D.setInputImage(MTBImage img)
Specify input image. |
void |
NucleusSeparator2DAlgos.setInputLabelImage(MTBImage img)
Specify label input image. |
void |
NucleusSeparator2D.setInputLabelImage(MTBImage img)
Specify label input image. |
void |
NucleusSeparator2DPeakSearch.setLabelImg(MTBImage label)
Specify label input image. |
void |
NucleusSeparator2DBeamCut.setLabelImg(MTBImage value)
Set value of labelImg. |
Constructors in de.unihalle.informatik.MiToBo.apps.nuclei2D with parameters of type MTBImage | |
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NucleusDetector2D(MTBImage img,
NucleusDetector2D.NuclDetectMode opmode,
ImgThreshNiblack niblackOp,
boolean doMorph,
int msize,
int minSize,
boolean fillHoles)
Constructor. |
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NucleusSeparator2D(MTBImage label,
NucleusSeparator2DAlgos op)
Default constructor. |
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NucleusSeparator2DBeamCut(MTBImage labelImg)
Constructor. |
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NucleusSeparator2DBeamCut(MTBImage labelImg,
NucleusSeparator2DBeamCut.NuclSeparateMode opMode)
Constructor. |
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NucleusSeparator2DPeakSearch(MTBImageShort grey,
MTBImage label)
Constructor with gray-scale and binary image. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.apps.particles2D |
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Fields in de.unihalle.informatik.MiToBo.apps.particles2D declared as MTBImage | |
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protected MTBImage |
HyperStackParticleDetectorUWT2D.inputImage
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Methods in de.unihalle.informatik.MiToBo.apps.particles2D that return MTBImage | |
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protected MTBImage |
ParticleDetectorUWT2D.fillHoles(MTBImage img)
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protected MTBImage |
ParticleDetectorUWT2D.gauss2poisson(MTBImage img)
Transforms image with gaussian noise to image with poisson noise J. |
protected MTBImage[] |
ParticleDetectorUWT2D.getCorrelationImages()
Compute the correlation images as specified by the parameters. |
MTBImage |
ParticleDetectorUWT2D.getInputImage()
Get input image |
protected MTBImage |
ParticleDetectorUWT2D.getMaskFromNuclei(MTBImage nucleiImg)
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protected MTBImage |
ParticleDetectorUWT2D.inverseATrousDWT(MTBImage[] dwt)
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protected MTBImage |
ParticleDetectorUWT2D.labelImage(MTBImage img,
MTBRegion2DSet regs)
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protected MTBImage |
ParticleDetectorUWT2D.poisson2gauss(MTBImage img)
Transforms image with poisson noise to image with gaussian noise J. |
protected MTBImage |
ParticleDetectorUWT2D.processedRegionsToBinImage(MTBImage img,
MTBRegion2DSet regs,
int _minRegionSize)
Create a binary image from given regions. |
protected MTBImage |
ParticleDetectorUWT2D.regionsToBinImage(MTBImage img,
MTBImage mask,
Vector<MTBRegion2D> regs)
Create binary image from a set of regions. |
protected MTBImage |
ParticleDetectorUWT2D.threshImage(MTBImage img,
double thresh)
|
protected MTBImage |
ParticleDetectorUWT2D.threshImgNiblack(MTBImage img,
double k,
int winsize)
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Methods in de.unihalle.informatik.MiToBo.apps.particles2D with parameters of type MTBImage | |
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protected MTBImage |
ParticleDetectorUWT2D.fillHoles(MTBImage img)
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protected MTBImage |
ParticleDetectorUWT2D.gauss2poisson(MTBImage img)
Transforms image with gaussian noise to image with poisson noise J. |
protected Integer |
ParticleDetectorUWT2D.getLabelMostInRegion(MTBRegion2D reg,
MTBImage img)
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protected Vector<Integer> |
ParticleDetectorUWT2D.getLabelsInRegion(MTBRegion2D reg,
MTBImage img)
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protected MTBImage |
ParticleDetectorUWT2D.getMaskFromNuclei(MTBImage nucleiImg)
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protected MTBImageHistogram |
ParticleDetectorUWT2D.getNormalizedCumulativeHistogram(MTBImage img,
int bins)
Create a normalized cumulative histogram from an image |
protected MTBTree |
ParticleDetectorUWT2D.getRegionsTree(MTBImage[] binaryImages)
Build a tree of regions from binarized images. |
protected MTBImage |
ParticleDetectorUWT2D.inverseATrousDWT(MTBImage[] dwt)
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protected MTBImage |
ParticleDetectorUWT2D.labelImage(MTBImage img,
MTBRegion2DSet regs)
|
protected double |
ParticleDetectorUWT2D.logPofRegion(MTBRegion2D reg,
MTBImage img,
MTBImageHistogram cumHist)
|
protected Vector<MTBTreeNode> |
ParticleDetectorUWT2D.meaningfulNodes(MTBTreeNode treeNode,
MTBImage[] corrImgs,
MTBImageHistogram[] hists,
int mode)
Get the most meaningful regions from a (sub)tree. |
protected double |
ParticleDetectorUWT2D.meanOfRegion(MTBRegion2D reg,
MTBImage img)
|
protected MTBImage |
ParticleDetectorUWT2D.poisson2gauss(MTBImage img)
Transforms image with poisson noise to image with gaussian noise J. |
protected MTBImage |
ParticleDetectorUWT2D.processedRegionsToBinImage(MTBImage img,
MTBRegion2DSet regs,
int _minRegionSize)
Create a binary image from given regions. |
protected MTBImage |
ParticleDetectorUWT2D.regionsToBinImage(MTBImage img,
MTBImage mask,
Vector<MTBRegion2D> regs)
Create binary image from a set of regions. |
void |
ParticleDetectorUWT2D.setInputImage(MTBImage img)
Set input image |
void |
MultiChannelParticleAnalyzer2D.setInputImage(MTBImage img)
Specify input image. |
void |
HyperStackParticleDetectorUWT2D.setInputImage(MTBImage inputimage)
|
protected void |
ParticleDetectorUWT2D.threshDWTCoeffs(MTBImage img,
double sigma)
|
protected void |
ParticleDetectorUWT2D.threshDWTJeffreys(MTBImage[] dwt,
double scaleOneSigma,
double[] sigmaScales)
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protected MTBImage |
ParticleDetectorUWT2D.threshImage(MTBImage img,
double thresh)
|
protected MTBImage |
ParticleDetectorUWT2D.threshImgNiblack(MTBImage img,
double k,
int winsize)
|
Constructors in de.unihalle.informatik.MiToBo.apps.particles2D with parameters of type MTBImage | |
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HyperStackParticleDetectorUWT2D(MTBImage inputImage,
ParticleDetectorUWT2D pdetector,
int channelIdx)
|
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MultiChannelParticleAnalyzer2D(MTBImage image,
Vector<ParticleDetector> pOps)
Default constructor. |
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ParticleDetectorUWT2D(MTBImage img,
int _Jmin,
int _Jmax,
double _corrThreshold,
int _scaleIntervalSize,
int _minRegionSize)
Constructor that sets the poisson2gauss flag to true |
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ParticleDetectorUWT2D(MTBImage img,
int _Jmin,
int _Jmax,
double _corrThreshold,
int _scaleIntervalSize,
int _minRegionSize,
boolean _poisson2gauss)
Constructor with non-default parameters. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.apps.scratchAssay |
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Methods in de.unihalle.informatik.MiToBo.apps.scratchAssay that return MTBImage | |
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MTBImage |
ScratchAssaySegmenter.getEntropyImage()
|
MTBImage |
ScratchAssaySegmenter.getResultImage()
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Methods in de.unihalle.informatik.MiToBo.apps.scratchAssay with parameters of type MTBImage | |
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void |
ScratchAssaySegmenter.setInitMask(MTBImage initMask)
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Constructors in de.unihalle.informatik.MiToBo.apps.scratchAssay with parameters of type MTBImage | |
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ScratchAssaySegmenter(MTBImage inImg,
int sigma,
int entropyFilterSize,
boolean isHorizontal,
boolean noCheck,
int maxIter)
|
Uses of MTBImage in de.unihalle.informatik.MiToBo.apps.singleCellTracking2D |
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Fields in de.unihalle.informatik.MiToBo.apps.singleCellTracking2D declared as MTBImage | |
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protected MTBImage |
CellSegmenter.inImg
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protected MTBImage |
CellSegmenter.resultImg
|
protected MTBImage |
CellSegmenter.seedImg
|
Methods in de.unihalle.informatik.MiToBo.apps.singleCellTracking2D that return MTBImage | |
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MTBImage |
TrackVisualizer.create2DTrajectoryImage(boolean pseudocolor,
boolean center)
|
MTBImage |
TrackVisualizer.create3DTrajectoryImage(boolean pseudocolor)
|
MTBImage |
TrackVisualizer.createOverlayImage(boolean pseudocolor)
|
MTBImage |
TrackVisualizer.createProgressionImage(boolean pseudocolor)
|
MTBImage |
FluorescentCellSegmenter.getResultImage()
|
MTBImage |
CellTrackerBipartite.getResultImage()
|
MTBImage |
CellSegmenter.getResultImage()
|
MTBImage |
CellSegmentationPostprocessing.getResultImage()
|
protected MTBImage |
FluorescentCellSegmenter.getSeedPoints(MTBImage frame)
coarse segmentation of input frame to localize cells |
protected abstract MTBImage |
CellSegmenter.getSeedPoints(MTBImage frame)
coarse segementation of input frame to localize cells |
protected MTBImage |
FluorescentCellSegmenter.preprocess(MTBImage frame)
|
protected abstract MTBImage |
CellSegmenter.preprocess(MTBImage frame)
|
protected MTBImage |
FluorescentCellSegmenter.segment(MTBImage frame,
MTBImage seedFrame)
|
protected abstract MTBImage |
CellSegmenter.segment(MTBImage frame,
MTBImage seedFrame)
segment cells in a single frame of the input image |
Methods in de.unihalle.informatik.MiToBo.apps.singleCellTracking2D with parameters of type MTBImage | |
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void |
TrajectoryExtraction2D.extractCentroids(MTBImage maskImg,
boolean include,
double factor)
|
static MTBRegion2D |
LabelAreasToRegions.getBackground(MTBImage frame,
int bgLabel)
|
static MTBRegion2DSet |
LabelAreasToRegions.getRegions(MTBImage frame)
|
static MTBRegion2DSet |
LabelAreasToRegions.getRegions(MTBImage frame,
int bgLabel)
|
protected MTBImage |
FluorescentCellSegmenter.getSeedPoints(MTBImage frame)
coarse segmentation of input frame to localize cells |
protected abstract MTBImage |
CellSegmenter.getSeedPoints(MTBImage frame)
coarse segementation of input frame to localize cells |
protected MTBImage |
FluorescentCellSegmenter.preprocess(MTBImage frame)
|
protected abstract MTBImage |
CellSegmenter.preprocess(MTBImage frame)
|
protected MTBImage |
FluorescentCellSegmenter.segment(MTBImage frame,
MTBImage seedFrame)
|
protected abstract MTBImage |
CellSegmenter.segment(MTBImage frame,
MTBImage seedFrame)
segment cells in a single frame of the input image |
void |
MigrationAnalyzer.setIntensityImage(MTBImage intImg)
|
void |
CellSegmenter.setSeedPointImage(MTBImage seedImg)
|
Constructors in de.unihalle.informatik.MiToBo.apps.singleCellTracking2D with parameters of type MTBImage | |
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CellMigrationAnalyzer(MTBImage img)
|
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CellSegmentationPostprocessing(MTBImage inImg)
|
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CellSegmenter(MTBImage inImg)
|
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CellTrackerBipartite(MTBImage inImg)
|
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FluorescentCellSegmenter(MTBImage inImg)
|
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IntensityAnalyzer(MTBImage intensityImg,
MTBImage labelImg)
|
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MigrationAnalyzer(MTBImage labelImg)
|
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MigrationAnalyzer(MTBImage labelImg,
MTBImage maskImg)
|
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ShapeAnalyzer(MTBImage labelImg)
constructor |
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TrackAnalyzer(MTBImage labelImg,
int minTrackLength)
|
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TrackVisualizer(MTBImage inImg,
Vector<Trajectory2D> trajectories)
|
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TrajectoryExtraction2D(MTBImage labelImg,
int minTrackLength)
|
Uses of MTBImage in de.unihalle.informatik.MiToBo.apps.xylem |
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Methods in de.unihalle.informatik.MiToBo.apps.xylem that return MTBImage | |
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MTBImage |
XylemGrower.getInitialSegmentation()
|
MTBImage |
XylemInitialSegmentation.getXylemImage()
Return the input xylem image. |
MTBImage |
XylemGrower.getXylemImage()
Return the Hue/Saturation/{Intensity|Brightness|Value}- MTBImage . |
Methods in de.unihalle.informatik.MiToBo.apps.xylem with parameters of type MTBImage | |
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void |
XylemInitialSegmentation.setXylemImage(MTBImage xylemImage)
Set the input xylem image - this must be an 8bit image. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.color.conversion |
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Methods in de.unihalle.informatik.MiToBo.color.conversion that return MTBImage | |
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MTBImage |
RGBToHSXConverter.getHueMTBImg()
Get the hue channel image. |
MTBImage |
RGBToHSXConverter.getResultMTBImage()
Returns the converted image, null if not available. |
MTBImage |
RGBToHSXConverter.getSatMTBImg()
Get the saturation channel image. |
MTBImage |
RGBToHSXConverter.getXMTBImg()
Get the value channel image. |
Methods in de.unihalle.informatik.MiToBo.color.conversion with parameters of type MTBImage | |
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void |
RGBToHSXConverter.setHueMTBImg(MTBImage hueChannelImage)
Set the hue channel image. |
void |
RGBToHSXConverter.setSatMTBImg(MTBImage saturationChannelImage)
Set the saturation channel image. |
void |
RGBToHSXConverter.setXMTBImg(MTBImage valueChannelImage)
Set the value channel image. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.core.datatypes |
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Methods in de.unihalle.informatik.MiToBo.core.datatypes that return MTBImage | |
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MTBImage |
MTBRegion2D.toMTBImage(String file,
MTBImage image)
Method to save a region with in a given MTBImage image. |
MTBImage |
MTBBorder2D.toMTBImage(String file,
MTBImage image)
Draws border with all inner borders to a given image. |
Methods in de.unihalle.informatik.MiToBo.core.datatypes with parameters of type MTBImage | |
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void |
MTBPolygon2D.drawPolygon(MTBImage img)
Draw a polygon into an image (in red color). |
void |
MTBPolygon2D.drawPolygon(MTBImage img,
int color)
Draw a polygon into an image. |
void |
MTBPolygon2D.drawPolygonPoints(MTBImage img)
Draw polygon points into an image (in red color and as crosses). |
void |
MTBPolygon2D.drawPolygonPoints(MTBImage img,
int color,
int mode)
Draw polygon points into an image. |
MTBImage |
MTBRegion2D.toMTBImage(String file,
MTBImage image)
Method to save a region with in a given MTBImage image. |
MTBImage |
MTBBorder2D.toMTBImage(String file,
MTBImage image)
Draws border with all inner borders to a given image. |
Constructors in de.unihalle.informatik.MiToBo.core.datatypes with parameters of type MTBImage | |
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MTBImageHistogram(MTBImage img)
construct a new MTBHistogram object from the given MTBImage number of bins is 256 and the histogram ranges from the smallest image value to the largest image value |
|
MTBImageHistogram(MTBImage img,
int bins)
construct a new MTBHistogram object from the given MTBImage the histogram ranges from the smallest image value to the largest image value |
|
MTBImageHistogram(MTBImage img,
int bins,
double lowBoundary,
double highBoundary)
construct a histogram for the given input image with specification of binning and value range all MTBImage types except RGB type are supported |
|
MTBImageHistogram(MTBImage img,
MTBImage mask,
int bins)
construct a new MTBHistogram object from the given MTBImage the histogram ranges from the smallest image value to the largest image value |
|
MTBImageHistogram(MTBImage img,
MTBImage mask,
int bins,
double lowBoundary,
double highBoundary)
construct a histogram for the given input image only for the pixels specified by a binary mask all MTBImage types except RGB type are supported with specification of binning and value range |
|
MTBRegion2DSet(MTBImage labelimage)
Construct a set of regions from a label image. |
|
MTBRegion2DSet(MTBImage labelimage,
int backgroundLabel)
Construct a set of regions from a label image. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.core.datatypes.images |
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Subclasses of MTBImage in de.unihalle.informatik.MiToBo.core.datatypes.images | |
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class |
MTBImageByte
Wrapper class for easy access to Byte (hyper)stacks. |
class |
MTBImageDouble
Class for easy access to Double (hyper)stacks. |
class |
MTBImageFloat
Wrapper class for easy access to Float (hyper)stacks. |
class |
MTBImageInt
Class for easy access to Int (hyper)stacks. |
class |
MTBImageRGB
Class for easy access to RGB (hyper)stacks. |
class |
MTBImageShort
Wrapper class for easy access to Short (hyper)stacks. |
Fields in de.unihalle.informatik.MiToBo.core.datatypes.images declared as MTBImage | |
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protected MTBImage |
MTBImageTileAdapter.inImg
Image to process. |
Methods in de.unihalle.informatik.MiToBo.core.datatypes.images that return MTBImage | |
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MTBImage |
MTBImage.convertType(MTBImage.MTBImageType type,
boolean scaleDown)
Create an image of given type from this image's values. |
protected MTBImage |
MTBImage.MTBImageFactory.convertType(MTBImage img,
MTBImage.MTBImageType type,
boolean scaleDown)
Create an image of given type from this image's values. |
MTBImage |
MTBImage.convertType(MTBOperator callingOperator,
MTBImage.MTBImageType type,
boolean scaleDown)
Create an image of given type from this image's values. |
MTBImage |
MTBImageWindow.createImageFromWindow()
|
static MTBImage |
MTBImage.createMTBImage(ij.ImagePlus img)
Factory method to create MTBImage objects. |
static MTBImage |
MTBImage.createMTBImage(int sizeX,
int sizeY,
int sizeZ,
int sizeT,
int sizeC,
MTBImage.MTBImageType type)
Factory method to create MTBImage objects with value 0 at each coordinate. |
MTBImage |
MTBImage.duplicate()
Duplicates the object. |
MTBImage |
MTBImage.MTBImageFactory.duplicate(MTBImage img)
|
MTBImage |
MTBImage.duplicate(MTBOperator callingOperator)
Duplicates the object. |
MTBImage |
MTBImageSet.get(int i)
|
MTBImage[][] |
MTBImageTileAdapter.getAllTiles()
Generates and returns array of all tiles. |
MTBImage |
MTBImageRGB.getChannelB()
Get a reference to the blue channel image. |
MTBImage |
MTBImageRGB.getChannelG()
Get a reference to the green channel image. |
MTBImage |
MTBImageRGB.getChannelR()
Get a reference to the red channel image. |
MTBImage |
MTBImage.getCurrentSlice()
Get a copy of the current slice. |
MTBImage |
MTBImage.getCurrentSlice(MTBOperator callingOperator)
Get a copy of the current slice. |
MTBImage |
MTBImage.getImagePart(int x,
int y,
int z,
int t,
int c,
int sizeX,
int sizeY,
int sizeZ,
int sizeT,
int sizeC)
Get a copy of a part of this image as new MTBImage. |
protected MTBImage |
MTBImage.MTBImageFactory.getImagePart(MTBImage img,
int x,
int y,
int z,
int t,
int c,
int sizeX,
int sizeY,
int sizeZ,
int sizeT,
int sizeC)
Get a copy of a part of this image as new MTBImage |
MTBImage |
MTBImage.getImagePart(MTBOperator callingOperator,
int x,
int y,
int z,
int t,
int c,
int sizeX,
int sizeY,
int sizeZ,
int sizeT,
int sizeC)
Get a copy of a part of this image as new MTBImage. |
protected MTBImage |
MTBImage.MTBImageFactory.getInImg()
|
MTBImage |
MTBImage.MTBImageFactory.getResultImg()
|
MTBImage |
MTBImage.getSlice(int z,
int t,
int c)
Get a copy of the specified slice. |
protected MTBImage |
MTBImage.MTBImageFactory.getSlice(MTBImage img,
int _z,
int _t,
int _c)
Get a copy of the specified slice |
MTBImage |
MTBImage.getSlice(MTBOperator callingOperator,
int z,
int t,
int c)
Get a copy of the specified slice. |
MTBImage |
MTBImageTileAdapter.getTile(int idX,
int idY)
Returns tile with given indices. |
MTBImage |
MTBImageTileAdapter.TileIterator.next()
|
MTBImage[] |
MTBImageSet.toArray()
|
Methods in de.unihalle.informatik.MiToBo.core.datatypes.images that return types with arguments of type MTBImage | |
---|---|
Iterator<MTBImage> |
MTBImageTileAdapter.iterator()
|
Methods in de.unihalle.informatik.MiToBo.core.datatypes.images with parameters of type MTBImage | |
---|---|
void |
MTBImageSet.add(MTBImage img)
|
void |
MTBImage.adoptSliceLabels(MTBImage src)
Copy slice labels from src to this |
protected MTBImage |
MTBImage.MTBImageFactory.convertType(MTBImage img,
MTBImage.MTBImageType type,
boolean scaleDown)
Create an image of given type from this image's values. |
void |
MTBImage.copyPhysicalProperties(MTBImage sourceImg)
Copy physical properties like stepsizes and units from sourceImg to this. |
MTBImage |
MTBImage.MTBImageFactory.duplicate(MTBImage img)
|
boolean |
MTBImage.equals(MTBImage img)
Test if this object and img are of same type, have same size and same values |
boolean |
MTBImage.equalSize(MTBImage img)
Test if this object and img have the same size in x-, y-, z-, t- and c-dimension |
protected MTBImage |
MTBImage.MTBImageFactory.getImagePart(MTBImage img,
int x,
int y,
int z,
int t,
int c,
int sizeX,
int sizeY,
int sizeZ,
int sizeT,
int sizeC)
Get a copy of a part of this image as new MTBImage |
protected MTBImage |
MTBImage.MTBImageFactory.getSlice(MTBImage img,
int _z,
int _t,
int _c)
Get a copy of the specified slice |
protected void |
MTBImage.MTBImageFactory.setInImg(MTBImage _inImg)
|
void |
MTBImage.MTBImageFactory.setResultImg(MTBImage _resultImg)
|
Constructors in de.unihalle.informatik.MiToBo.core.datatypes.images with parameters of type MTBImage | |
---|---|
MTBImage.MTBImageFactory(MTBImage _inImg)
Duplicate constructor |
|
MTBImage.MTBImageFactory(MTBImage _inImg,
int _z,
int _t,
int _c)
Get slice constructor |
|
MTBImage.MTBImageFactory(MTBImage _inImg,
int _x,
int _y,
int _z,
int _t,
int _c,
int _sizeX,
int _sizeY,
int _sizeZ,
int _sizeT,
int _sizeC)
Create a new image from the specified image part |
|
MTBImage.MTBImageFactory(MTBImage _inImg,
MTBImage.MTBImageType type,
boolean _scaleDown)
Convert constructor |
|
MTBImageSet(MTBImage[] images)
|
|
MTBImageTileAdapter(MTBImage img,
int sizeX,
int sizeY)
Default constructor. |
|
MTBImageTileAdapter(MTBImage img,
int sizeX,
int sizeY,
int shiftInX,
int shiftInY)
Default constructor. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.core.datatypes.neurites |
---|
Methods in de.unihalle.informatik.MiToBo.core.datatypes.neurites that return MTBImage | |
---|---|
MTBImage |
MTBNeurite2DSet.getNeuriteStack(Color regionColor)
Visualize the neurites skeleton graphs and regions. |
MTBImage |
MTBNeurite2DProfileSet.getVoronoiStack()
Get stack of voronoi tesselation images. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.enhance |
---|
Methods in de.unihalle.informatik.MiToBo.enhance that return MTBImage | |
---|---|
MTBImage |
TopHatContrastEnhancement.getBthImage()
Get black top-hat image. |
MTBImage |
TopHatContrastEnhancement.getInputImage()
Get low contrast input image. |
MTBImage |
LocallyAdaptiveContrastEnhancement.getInputImage()
Returns the input image, null if not set. |
MTBImage |
IlluminationCorrection.getInputImage()
Get uneven illuminated input image. |
MTBImage |
GammaCorrection2D.getInputImage()
Get the input image. |
MTBImage |
LocallyAdaptiveContrastEnhancement.getRadiusImage()
Returns supplemental radius image, null if not generated. |
MTBImage |
TopHatContrastEnhancement.getResultImage()
Get contrast enhanced result image. |
MTBImage |
LocallyAdaptiveContrastEnhancement.getResultImage()
Returns result image. |
MTBImage |
IlluminationCorrection.getResultImage()
Get illumination corrected result image. |
MTBImage |
GammaCorrection2D.getResultImage()
Get the gamma corrected image. |
MTBImage |
TopHatContrastEnhancement.getWthImage()
Get white top-hat image. |
Methods in de.unihalle.informatik.MiToBo.enhance with parameters of type MTBImage | |
---|---|
void |
TopHatContrastEnhancement.setInputImage(MTBImage _inputImage)
Set low contrast input image. |
void |
LocallyAdaptiveContrastEnhancement.setInputImage(MTBImage inimg)
Specify the input image. |
void |
IlluminationCorrection.setInputImage(MTBImage _inputImage)
Set uneven illuminated input image. |
void |
GammaCorrection2D.setInputImage(MTBImage inImg)
Set the input image. |
Constructors in de.unihalle.informatik.MiToBo.enhance with parameters of type MTBImage | |
---|---|
GammaCorrection2D(MTBImage inimg,
double _gamma,
int _channel)
Constructor to create a new gamma correction 2D operator. |
|
GammaCorrection2D(MTBImage inimg,
int _channel)
No gamma value is set. |
|
IlluminationCorrection(MTBImage _inputImage,
BasicMorphology _morphOp,
MTBImage.MTBImageType _outputType)
Constructor to create a new IlluminationCorrection object. |
|
LocallyAdaptiveContrastEnhancement(MTBImage inimg)
Constructor with given image. |
|
LocallyAdaptiveContrastEnhancement(MTBImage inimg,
double pc,
int maxr)
Constructor with given image and parameters. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.features |
---|
Fields in de.unihalle.informatik.MiToBo.features declared as MTBImage | |
---|---|
protected MTBImage |
FeatureCalculator.inImg
Input image to calculate features for. |
Methods in de.unihalle.informatik.MiToBo.features that return MTBImage | |
---|---|
MTBImage |
TileFeatureCalculator.getResultImage()
Get image with result data. |
Methods in de.unihalle.informatik.MiToBo.features with parameters of type MTBImage | |
---|---|
void |
TileFeatureCalculator.setInputImage(MTBImage img)
Set input image. |
void |
FeatureCalculator.setInputImage(MTBImage input)
Sets the input image to work on. |
void |
TileFeatureCalculator.setMask(MTBImage exMask)
Set optional exclude mask. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.fields |
---|
Methods in de.unihalle.informatik.MiToBo.fields that return MTBImage | |
---|---|
protected MTBImage |
FieldOperations2D.getDiffX_image()
Calculate the image from the first order partial derivative in x-direction from the vectors U. |
protected MTBImage |
FieldOperations2D.getDiffY_image()
Calculate the image from the first order partial derivative in y-direction from the vectors V. |
MTBImage |
GradientFieldCalculator2D.getInputImage()
Get the underlying input image of the gradient field.. |
MTBImage |
GVFFieldCalculator2D.getInputImage()
Get input image. |
protected MTBImage |
FieldOperations2D.getMagImage()
Calculate the gradient magnitude image from the vectors U and V. |
protected MTBImage |
FieldOperations2D.getNormedMagImage()
Normalize the gradient magnitude values into a range of [0,1]. |
MTBImage |
FieldOperations2D.getResultImage()
Get result image of the operation on the vector field. |
Methods in de.unihalle.informatik.MiToBo.fields with parameters of type MTBImage | |
---|---|
void |
GradientFieldCalculator2D.setInputImage(MTBImage inImg)
Set the underlying input image of the gradient field. |
void |
GVFFieldCalculator2D.setInputImage(MTBImage inImg)
Set input image. |
Constructors in de.unihalle.informatik.MiToBo.fields with parameters of type MTBImage | |
---|---|
GradientFieldCalculator2D(MTBImage inImg,
GradientFieldCalculator2D.GradientMode mode)
Constructor. |
|
GVFFieldCalculator2D(MTBImage inImg,
int iterations)
Constructor. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.filters.linear |
---|
Methods in de.unihalle.informatik.MiToBo.filters.linear that return MTBImage | |
---|---|
protected MTBImage |
LinearFilter.convolve(MTBImage img,
MTBImage kernel,
int[] kernelAnchor,
boolean normalize,
MTBImageWindow.BoundaryPadding boundaryPadding)
Convolve an image with a specified kernel. |
protected MTBImage |
GaussFilter.gaussFilter()
compute the Gaussian filter |
MTBImage |
GaussFilter.getGaussKernelC()
Get Gaussian kernel image (non-normalized) in c-dimension for given parameters, null if sigma is zero in c-dimension |
MTBImage |
GaussFilter.getGaussKernelT()
Get Gaussian kernel image (non-normalized) in t-dimension for given parameters, null if sigma is zero in t-dimension |
MTBImage |
GaussFilter.getGaussKernelX()
Get Gaussian kernel image (non-normalized) in x-dimension for given parameters, null if sigma is zero in x-dimension |
MTBImage |
GaussFilter.getGaussKernelY()
Get Gaussian kernel image (non-normalized) in y-dimension for given parameters, null if sigma is zero in y-dimension |
MTBImage |
GaussFilter.getGaussKernelZ()
Get Gaussian kernel image (non-normalized) in z-dimension for given parameters, null if sigma is zero in z-dimension |
MTBImage |
MeanFilter.getInputImg()
Get input image. |
MTBImage |
LinearFilter.getInputImg()
Get input image. |
MTBImage |
GaussFilter.getInputImg()
Get input image. |
MTBImage |
LinearFilter.getKernelImg()
Get convolution kernel (image). |
MTBImage |
MeanFilter.getMeanKernelC()
Get mean kernel image (non-normalized) in c-dimension for given parameters, null if size is zero in c-dimension |
MTBImage |
MeanFilter.getMeanKernelT()
Get mean kernel image (non-normalized) in t-dimension for given parameters, null if size is zero in t-dimension |
MTBImage |
MeanFilter.getMeanKernelX()
Get mean kernel image (non-normalized) in x-dimension for given parameters, null if size is zero in x-dimension |
MTBImage |
MeanFilter.getMeanKernelY()
Get mean kernel image (non-normalized) in y-dimension for given parameters, null if size is zero in y-dimension |
MTBImage |
MeanFilter.getMeanKernelZ()
Get mean kernel image (non-normalized) in z-dimension for given parameters, null if size is zero in z-dimension |
MTBImage |
MeanFilter.getResultImg()
Get resulting image. |
MTBImage |
LinearFilter.getResultImg()
Get resulting image. |
MTBImage |
GaussFilter.getResultImg()
Get resulting image. |
protected MTBImage |
MeanFilter.meanFilter()
compute the mean filter |
Methods in de.unihalle.informatik.MiToBo.filters.linear with parameters of type MTBImage | |
---|---|
protected MTBImage |
LinearFilter.convolve(MTBImage img,
MTBImage kernel,
int[] kernelAnchor,
boolean normalize,
MTBImageWindow.BoundaryPadding boundaryPadding)
Convolve an image with a specified kernel. |
void |
MeanFilter.setInputImg(MTBImage img)
Set input image. |
void |
LinearFilter.setInputImg(MTBImage img)
Set input image. |
void |
GaussFilter.setInputImg(MTBImage img)
Set input image. |
void |
LinearFilter.setKernelImg(MTBImage kernelImg)
Set convolution kernel (image). |
Constructors in de.unihalle.informatik.MiToBo.filters.linear with parameters of type MTBImage | |
---|---|
GaussFilter(MTBImage img,
double sigmaX,
double sigmaY)
Constructor for Gaussian filtering in x- and y-dimension. |
|
GaussFilter(MTBImage img,
double sigmaX,
double sigmaY,
double sigmaZ)
Constructor for Gaussian filtering in x-, y- and z-dimension. |
|
GaussFilter(MTBImage img,
double sigmaX,
double sigmaY,
double sigmaZ,
double sigmaT,
double sigmaC,
MTBImageWindow.BoundaryPadding boundaryPadding,
double kernelTruncation,
GaussFilter.SigmaInterpretation sigmaInterpretation)
Constructor for Gaussian filtering. |
|
LinearFilter(MTBImage inImg,
MTBImage kernelImg)
Constructor |
|
LinearFilter(MTBImage inImg,
MTBImage kernelImg,
int[] kernelOrigin,
boolean kernelNormalization,
MTBImageWindow.BoundaryPadding boundaryPadding)
Constructor |
|
MeanFilter(MTBImage img,
Integer sizeX,
Integer sizeY)
Constructor for mean filtering in x- and y-dimension. |
|
MeanFilter(MTBImage img,
Integer sizeX,
Integer sizeY,
Integer sizeZ)
Constructor for mean filtering in x-, y- and z-dimension. |
|
MeanFilter(MTBImage img,
Integer sizeX,
Integer sizeY,
Integer sizeZ,
Integer sizeT,
Integer sizeC,
MTBImageWindow.BoundaryPadding boundaryPadding)
Constructor for mean filtering. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.filters.linear.anisotropic |
---|
Fields in de.unihalle.informatik.MiToBo.filters.linear.anisotropic declared as MTBImage | |
---|---|
protected MTBImage |
OrientedFilter2DBatchAnalyzer.inputImg
Input image to process. |
protected MTBImage |
OrientedFilter2D.inputImg
Input image to process. |
Methods in de.unihalle.informatik.MiToBo.filters.linear.anisotropic with parameters of type MTBImage | |
---|---|
void |
OrientedFilter2DBatchAnalyzer.setInputImage(MTBImage img)
Specify the input image. |
void |
OrientedFilter2D.setInputImage(MTBImage img)
Set input image to analyze. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.filters.nonlinear |
---|
Methods in de.unihalle.informatik.MiToBo.filters.nonlinear that return MTBImage | |
---|---|
MTBImage |
RankOperator.getInImg()
Get value of Input argument inImg. |
MTBImage |
StatisticsFilter.getInputImage()
|
MTBImage |
StatisticsFilter.getResultImage()
|
MTBImage |
RankOperator.getResultImg()
Get value of Output argument resultImg. |
protected MTBImage |
RankOperator.rankOp(MTBImage img,
RankOperator.RankOpMode mode,
int radiusX,
int radiusY,
int radiusZ,
int radiusT,
int radiusC)
Compute the rank operation of a gray-valued image, stack or hyperstack |
Methods in de.unihalle.informatik.MiToBo.filters.nonlinear with parameters of type MTBImage | |
---|---|
protected MTBImage |
RankOperator.rankOp(MTBImage img,
RankOperator.RankOpMode mode,
int radiusX,
int radiusY,
int radiusZ,
int radiusT,
int radiusC)
Compute the rank operation of a gray-valued image, stack or hyperstack |
void |
RankOperator.setInImg(MTBImage img)
Set value of Input argument inImg. |
protected void |
RankOperator.setResultImg(MTBImage img)
Set value of Output argument resultImg. |
Constructors in de.unihalle.informatik.MiToBo.filters.nonlinear with parameters of type MTBImage | |
---|---|
RankOperator(MTBImage inImg,
RankOperator.RankOpMode mode,
int maskRadius)
Constructor |
|
RankOperator(MTBImage inImg,
RankOperator.RankOpMode mode,
int maskRadiusX,
int maskRadiusY,
int maskRadiusZ,
int maskRadiusT,
int maskRadiusC)
Constructor |
|
StatisticsFilter(MTBImage inImg,
StatisticsFilter.FilterMethod method,
int maskSize)
|
Uses of MTBImage in de.unihalle.informatik.MiToBo.filters.vesselness |
---|
Fields in de.unihalle.informatik.MiToBo.filters.vesselness declared as MTBImage | |
---|---|
protected MTBImage |
MPMFFilter2D.inputImg
Input image to be processed. |
protected MTBImage |
MFFDOGMultiScaleFilter2D.inputImg
Input image to be processed. |
protected MTBImage |
MFFDOGFilter2D.inputImg
Image to process. |
Methods in de.unihalle.informatik.MiToBo.filters.vesselness that return MTBImage | |
---|---|
MTBImage |
MedialnessMultiScaleFilter2D.getInputImage()
Get input image. |
Methods in de.unihalle.informatik.MiToBo.filters.vesselness with parameters of type MTBImage | |
---|---|
void |
MedialnessMultiScaleFilter2D.setInputImage(MTBImage inputImage)
Set input image. |
void |
MFFDOGFilter2D.setInputImage(MTBImage img)
Specify input image. |
Constructors in de.unihalle.informatik.MiToBo.filters.vesselness with parameters of type MTBImage | |
---|---|
MedialnessMultiScaleFilter2D(MTBImage _inputImage,
Integer _scaleNum,
Double _scaleMin,
Double _scaleMax,
Double _theta,
MedialnessMultiScaleFilter2D.FilterMode _filterMode,
Boolean _useThresh)
Constructor to create a new 2D multi-scale medialness filter. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.io.images |
---|
Fields in de.unihalle.informatik.MiToBo.io.images declared as MTBImage | |
---|---|
protected MTBImage |
ImageReaderMTB.resultMTBImage
|
Methods in de.unihalle.informatik.MiToBo.io.images that return MTBImage | |
---|---|
MTBImage |
ImageWriterMTB.getInputMTBImage()
Get MTBImage that has to be stored to disk |
MTBImage |
ImageReaderMTB.getResultMTBImage()
Get resulting image that was read from disk. |
protected MTBImage |
ImageReaderMTB.readMTBImage(int imageIdx)
Read image imageIdx from the specified file and return it as MTBImage object. |
Methods in de.unihalle.informatik.MiToBo.io.images with parameters of type MTBImage | |
---|---|
void |
ImageWriterMTB.setInputMTBImage(MTBImage img)
Set MTBImage to store to disk |
protected void |
ImageReaderMTB.setResultMTBImage(MTBImage img)
Set resulting image |
protected void |
ImageWriterMTB.writeMTBImage(String filename,
MTBImage img)
Write an MTBImage to disk |
Constructors in de.unihalle.informatik.MiToBo.io.images with parameters of type MTBImage | |
---|---|
ImageWriterMTB(MTBImage img,
String filename)
Image file output operator for MTBImage objects. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.math.images |
---|
Methods in de.unihalle.informatik.MiToBo.math.images that return MTBImage | |
---|---|
protected MTBImage |
ImageArithmetics.abs_diff(MTBImage img1,
MTBImage img2)
Absolute difference of the elements of two images |
MTBImage |
MTBImageArithmetics.abs(MTBImage img)
Absolute values of the image elements. |
protected MTBImage |
ImageArithmetics.abs(MTBImage img)
Absolute values of the image elements. |
MTBImage |
MTBImageArithmetics.absDiff(MTBImage img1,
MTBImage img2)
Absolute difference of two images. |
MTBImage |
MTBImageArithmetics.add(MTBImage img,
double constant)
Add a constant to each image value |
protected MTBImage |
ImageArithmetics.add(MTBImage img,
double constant)
Add a constant to each image value |
MTBImage |
MTBImageArithmetics.add(MTBImage img1,
MTBImage img2)
Add the elements two images |
protected MTBImage |
ImageArithmetics.add(MTBImage img1,
MTBImage img2)
Add the elements of two images |
MTBImage |
MTBImageArithmetics.and(MTBImage img1,
MTBImage img2)
Bitwise logical AND of two images. |
protected MTBImage |
ImageArithmetics.and(MTBImage img1,
MTBImage img2)
Bitwise logical AND of two images. |
MTBImage |
MTBImageArithmetics.div(MTBImage img1,
MTBImage img2)
Divide the elements of two images (img1/img2) |
protected MTBImage |
ImageArithmetics.div(MTBImage img1,
MTBImage img2)
Divide the elements of two images (img1/img2) |
protected MTBImage |
ImageArithmetics.getInImg1()
|
protected MTBImage |
ImageArithmetics.getInImg2()
|
protected MTBImage |
ImageArithmetics.getResultImg()
|
MTBImage |
MTBImageArithmetics.inv(MTBImage img)
Invert the image. |
protected MTBImage |
ImageArithmetics.inv(MTBImage img)
Inverts the image. |
MTBImage |
MTBImageArithmetics.max(MTBImage img1,
MTBImage img2)
Pixelwise maximum |
protected MTBImage |
ImageArithmetics.max(MTBImage img1,
MTBImage img2)
Pixelwise maximum |
MTBImage |
MTBImageArithmetics.min(MTBImage img1,
MTBImage img2)
Pixelwise minimum |
protected MTBImage |
ImageArithmetics.min(MTBImage img1,
MTBImage img2)
Pixelwise minimum |
MTBImage |
MTBImageArithmetics.mult(MTBImage img,
double constant)
Multiply each image value by a constant |
protected MTBImage |
ImageArithmetics.mult(MTBImage img,
double constant)
Multiply each image value by a constant |
MTBImage |
MTBImageArithmetics.mult(MTBImage img1,
MTBImage img2)
Multiply the elements of two images |
protected MTBImage |
ImageArithmetics.mult(MTBImage img1,
MTBImage img2)
Multiply the elements of two images |
MTBImage |
MTBImageArithmetics.or(MTBImage img1,
MTBImage img2)
Bitwise logical OR of two images. |
protected MTBImage |
ImageArithmetics.or(MTBImage img1,
MTBImage img2)
Bitwise OR of the elements of two images |
MTBImage |
MTBImageArithmetics.pow(MTBImage img,
double exponent)
Raise image values to the power of 'exponent' |
protected MTBImage |
ImageArithmetics.pow(MTBImage img,
double constant)
Raise image values to the power of 'constant' |
MTBImage |
MTBImageArithmetics.sub(MTBImage img1,
MTBImage img2)
Subtract the elements two images (img1 - img2) |
protected MTBImage |
ImageArithmetics.sub(MTBImage img1,
MTBImage img2)
Subtract the elements of two images (img1 - img2) |
Methods in de.unihalle.informatik.MiToBo.math.images with parameters of type MTBImage | |
---|---|
protected MTBImage |
ImageArithmetics.abs_diff(MTBImage img1,
MTBImage img2)
Absolute difference of the elements of two images |
MTBImage |
MTBImageArithmetics.abs(MTBImage img)
Absolute values of the image elements. |
protected MTBImage |
ImageArithmetics.abs(MTBImage img)
Absolute values of the image elements. |
MTBImage |
MTBImageArithmetics.absDiff(MTBImage img1,
MTBImage img2)
Absolute difference of two images. |
MTBImage |
MTBImageArithmetics.add(MTBImage img,
double constant)
Add a constant to each image value |
protected MTBImage |
ImageArithmetics.add(MTBImage img,
double constant)
Add a constant to each image value |
MTBImage |
MTBImageArithmetics.add(MTBImage img1,
MTBImage img2)
Add the elements two images |
protected MTBImage |
ImageArithmetics.add(MTBImage img1,
MTBImage img2)
Add the elements of two images |
MTBImage |
MTBImageArithmetics.and(MTBImage img1,
MTBImage img2)
Bitwise logical AND of two images. |
protected MTBImage |
ImageArithmetics.and(MTBImage img1,
MTBImage img2)
Bitwise logical AND of two images. |
MTBImage |
MTBImageArithmetics.div(MTBImage img1,
MTBImage img2)
Divide the elements of two images (img1/img2) |
protected MTBImage |
ImageArithmetics.div(MTBImage img1,
MTBImage img2)
Divide the elements of two images (img1/img2) |
MTBImage |
MTBImageArithmetics.inv(MTBImage img)
Invert the image. |
protected MTBImage |
ImageArithmetics.inv(MTBImage img)
Inverts the image. |
MTBImage |
MTBImageArithmetics.max(MTBImage img1,
MTBImage img2)
Pixelwise maximum |
protected MTBImage |
ImageArithmetics.max(MTBImage img1,
MTBImage img2)
Pixelwise maximum |
MTBImage |
MTBImageArithmetics.min(MTBImage img1,
MTBImage img2)
Pixelwise minimum |
protected MTBImage |
ImageArithmetics.min(MTBImage img1,
MTBImage img2)
Pixelwise minimum |
MTBImage |
MTBImageArithmetics.mult(MTBImage img,
double constant)
Multiply each image value by a constant |
protected MTBImage |
ImageArithmetics.mult(MTBImage img,
double constant)
Multiply each image value by a constant |
MTBImage |
MTBImageArithmetics.mult(MTBImage img1,
MTBImage img2)
Multiply the elements of two images |
protected MTBImage |
ImageArithmetics.mult(MTBImage img1,
MTBImage img2)
Multiply the elements of two images |
MTBImage |
MTBImageArithmetics.or(MTBImage img1,
MTBImage img2)
Bitwise logical OR of two images. |
protected MTBImage |
ImageArithmetics.or(MTBImage img1,
MTBImage img2)
Bitwise OR of the elements of two images |
MTBImage |
MTBImageArithmetics.pow(MTBImage img,
double exponent)
Raise image values to the power of 'exponent' |
protected MTBImage |
ImageArithmetics.pow(MTBImage img,
double constant)
Raise image values to the power of 'constant' |
protected void |
ImageArithmetics.setInImg1(MTBImage inImg1)
|
protected void |
ImageArithmetics.setInImg2(MTBImage inImg2)
|
protected void |
ImageArithmetics.setResultImg(MTBImage img)
|
MTBImage |
MTBImageArithmetics.sub(MTBImage img1,
MTBImage img2)
Subtract the elements two images (img1 - img2) |
protected MTBImage |
ImageArithmetics.sub(MTBImage img1,
MTBImage img2)
Subtract the elements of two images (img1 - img2) |
Constructors in de.unihalle.informatik.MiToBo.math.images with parameters of type MTBImage | |
---|---|
ImageArithmetics(ImageArithmetics.ArithOp op,
MTBImage inputImage,
double inputConstant)
Constructor for arithmetic operations considering one image and a constant. |
|
ImageArithmetics(ImageArithmetics.ArithOp op,
MTBImage inputImage1,
MTBImage inputImage2)
Constructor for arithmetic operations considering two images. |
|
ImageStatistics(MTBImage inimg,
ImageStatistics.StatValue mode)
Constructor with image argument. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.morphology |
---|
Methods in de.unihalle.informatik.MiToBo.morphology that return MTBImage | |
---|---|
MTBImage |
DistanceTransform.getDistanceImage()
Get the calculated distance map image. |
MTBImage |
ImgTophat.getInputImage()
Get reference to the current input image. |
MTBImage |
ImgOpen.getInputImage()
Returns the input image, null if not set. |
MTBImage |
ImgErode.getInputImage()
Returns the input image, null if not set. |
MTBImage |
ImgDilate.getInputImage()
Get value of inImg. |
MTBImage |
ImgClose.getInputImage()
Returns the input image, null if not set. |
MTBImage |
HDomeTransform3D.getInputImage()
Get reference to the current input image. |
MTBImage |
ComponentPostprocess.getInputImage()
Get reference to the current input image. |
MTBImage |
ImgTophat.getResultImage()
Get the result image after applying the operator. |
MTBImage |
ImgOpen.getResultImage()
Returns the opened image, null if not available. |
MTBImage |
ImgErode.getResultImage()
Returns the eroded image, null if not available. |
MTBImage |
ImgDilate.getResultImage()
Get value of resultImg. |
MTBImage |
ImgClose.getResultImage()
Returns the opened image, null if not available. |
MTBImage |
HDomeTransform3D.getResultImage()
Get the resulting h-dome image. |
MTBImage |
BasicMorphology.getResultImage()
|
protected MTBImage |
HDomeTransform3D.transform(MTBImage img,
double h)
Compute the h-dome transform |
Methods in de.unihalle.informatik.MiToBo.morphology with parameters of type MTBImage | |
---|---|
protected void |
HDomeTransform3D.hybridGrayscaleReconstruct(MTBImage mask,
MTBImage marker)
Implements the fast hybrid grayscale reconstruction algo of [Vincent93]. |
void |
BasicMorphology.setInImg(MTBImage _inImg)
Set input image for morphological operation. |
void |
HDomeTransform3D.setInputImage(MTBImage img)
Set input image |
void |
ImgTophat.setResultImage(MTBImage rimage)
Set the result image. |
void |
ImgDilate.setResultImage(MTBImage value)
Set value of resultImg. |
protected void |
HDomeTransform3D.setResultImage(MTBImage resultImage)
Set the result image. |
protected MTBImage |
HDomeTransform3D.transform(MTBImage img,
double h)
Compute the h-dome transform |
Constructors in de.unihalle.informatik.MiToBo.morphology with parameters of type MTBImage | |
---|---|
BasicMorphology(MTBImage inImg,
MTBStructuringElement mask)
|
|
ComponentPostprocess(MTBImage img,
ComponentPostprocess.ProcessMode pm)
Default constructor. |
|
ComponentPostprocess(MTBImage img,
ComponentPostprocess.ProcessMode pm,
int _minCompSize,
int _maxCompDist,
int maxVoroExpandDist)
Deprecated. |
|
ComponentPostprocess(MTBImage img,
ComponentPostprocess.ProcessMode pm,
int _minCompSize,
int _maxCompDist,
int maxVoroExpandDist,
double _roundnessThreshold)
Deprecated. |
|
HDomeTransform3D(MTBImage img,
double h)
Constructor |
|
ImgClose(MTBImage inimg,
int ms)
Constructor. |
|
ImgDilate(MTBImage inimg,
int ms)
Constructor. |
|
ImgErode(MTBImage inimg,
int ms)
Constructor. |
|
ImgOpen(MTBImage inimg,
int ms)
Constructor. |
|
ImgTophat(MTBImage ip,
ImgTophat.tophatMode op,
int msize)
Constructor with parameters. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.segmentation.activecontours.energies |
---|
Fields in de.unihalle.informatik.MiToBo.segmentation.activecontours.energies declared as MTBImage | |
---|---|
protected MTBImage |
MTBActiveContourEnergy_MeanSep.inImg
Image to work on. |
protected MTBImage |
MTBActiveContourEnergy_CVRegionFit.inImg
Image to work on. |
Constructors in de.unihalle.informatik.MiToBo.segmentation.activecontours.energies with parameters of type MTBImage | |
---|---|
MTBActiveContourEnergy_CVRegionFit(MTBImage im,
double lin,
double lout)
Default constructor with arguments. |
|
MTBActiveContourEnergy_MeanSep(MTBImage im)
Default constructor with parameter. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.segmentation.basics |
---|
Fields in de.unihalle.informatik.MiToBo.segmentation.basics declared as MTBImage | |
---|---|
protected MTBImage |
SegmentationInitializer.binaryImage
|
protected MTBImage |
SegmentationInitializer.labelImage
|
protected MTBImage |
SegmentationInitializer.thresholdImage
|
Methods in de.unihalle.informatik.MiToBo.segmentation.basics that return MTBImage | |
---|---|
MTBImage |
SegmentationInitializer.getBinaryImage()
Get the image for binary mode. |
MTBImage |
SegmentationInitializer.getLabelImage()
Get the label image. |
MTBImage |
MTBSegmentation2D.getLabelImage()
Returns a label image visualizing the segmentation. |
MTBImage |
MTBSegmentationInterface.getMask(int class_)
Gets the mask of the specified class (0 Background, 255 Foreground) |
MTBImage |
MTBSegmentation3D.getMask(int class_)
|
MTBImage |
MTBSegmentation2D.getMask(int class_)
|
MTBImage |
SegmentationInitializer.getThresholdImage()
Get image for thresholding |
Methods in de.unihalle.informatik.MiToBo.segmentation.basics with parameters of type MTBImage | |
---|---|
protected MTBSegmentation2D |
SegmentationInitializer.get2DInterface(MTBImage labelImg,
boolean binaryMode)
Generates 2D segmentation. |
protected MTBSegmentation3D |
SegmentationInitializer.get3DInterface(MTBImage labelImg,
boolean binaryMode)
Generates 3D segmentation. |
void |
SegmentationInitializer.setBinaryImage(MTBImage _binaryImage)
Set the binary image. |
void |
CalcSegmentationStatistics.setInputImage(MTBImage img)
Set the input image. |
void |
SegmentationInitializer.setLabelImage(MTBImage _labelImage)
Set the label image. |
void |
SegmentationInitializer.setThresholdImage(MTBImage _thresholdImage)
Set image for thresholding. |
Constructors in de.unihalle.informatik.MiToBo.segmentation.basics with parameters of type MTBImage | |
---|---|
CalcSegmentationStatistics(MTBImage im)
Default constructor. |
|
CalcSegmentationStatistics(MTBImage im,
MTBSegmentationInterface seg)
Default constructor. |
|
CalcSegmentationStatistics(MTBImage im,
MTBSegmentationInterface seg,
Vector<CalcSegmentationStatistics.CalcTargets> targets)
Default constructor. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.segmentation.levelset.core |
---|
Fields in de.unihalle.informatik.MiToBo.segmentation.levelset.core declared as MTBImage | |
---|---|
protected MTBImage |
LevelsetSolver.inputImg
Image to segment. |
Methods in de.unihalle.informatik.MiToBo.segmentation.levelset.core that return MTBImage | |
---|---|
MTBImage |
LevelsetSolver.getInputImg()
Get input image. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.segmentation.levelset.core.energies.derivable |
---|
Constructors in de.unihalle.informatik.MiToBo.segmentation.levelset.core.energies.derivable with parameters of type MTBImage | |
---|---|
MTBLevelEnergyDerivable_CVRegionFit(MTBImage img)
Constructor with given image. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.segmentation.levelset.nonPDE |
---|
Methods in de.unihalle.informatik.MiToBo.segmentation.levelset.nonPDE that return MTBImage | |
---|---|
MTBImage |
LevelsetSegmentationNonPDE.getInImg()
Get value of inImg. |
MTBImage |
LevelsetSegmentationNonPDE.getInitBinImg()
Get value of initBinImg. |
MTBImage |
LevelsetSegmentationNonPDE.getInitLabelImg()
Get value of initLabelImg. |
MTBImage |
LevelsetSegmentationNonPDE.getIntermediateLS()
|
MTBImage |
LevelsetSolveNonPDE.getInvalidImage()
Get value of invalidImage. |
MTBImage |
LevelsetSegmentationNonPDE.getInvalidImg()
Get value of invalidImg. |
MTBImage |
LevelsetSegmentationNonPDE.getResultContourImage()
Get value of ResultContourImage. |
MTBImage |
LevelsetSegmentationNonPDE.getResultImage()
Get value of ResultImage. |
Methods in de.unihalle.informatik.MiToBo.segmentation.levelset.nonPDE with parameters of type MTBImage | |
---|---|
static MTBLengthEnergyNonPDE |
MTBLengthEnergyKBNonPDE.createEnergy(MTBImage img,
MTBLevelsetMembership phi,
double mu)
Create a proper length energy asked for by the level set function. |
MTBGenericEnergyNonPDE |
MTBMeijeringFittingEnergyNonPDE.init(MTBImage img,
MTBLevelsetMembership phi)
Initialize the energy object. |
MTBGenericEnergyNonPDE |
MTBLengthEnergyNonPDE.init(MTBImage img,
MTBLevelsetMembership phi)
|
MTBGenericEnergyNonPDE |
MTBLengthEnergyKBNonPDE.init(MTBImage img,
MTBLevelsetMembership phi)
|
MTBGenericEnergyNonPDE |
MTBLengthEnergyKB2D2P4NNonPDE.init(MTBImage img,
MTBLevelsetMembership phi)
Here potentially anisotropic grids may be reflected setting weights accordingly |
MTBGenericEnergyNonPDE |
MTBLengthEnergyFWNonPDE.init(MTBImage img,
MTBLevelsetMembership phi)
|
MTBGenericEnergyNonPDE |
MTBGenericEnergyNonPDE.init(MTBImage img,
MTBLevelsetMembership phi)
Initialization routine which is called once before the energy is actually used. |
MTBGenericEnergyNonPDE |
MTBEnergySumNonPDE.init(MTBImage img,
MTBLevelsetMembership phi)
|
MTBGenericEnergyNonPDE |
MTBCVFittingEnergyNonPDE.init(MTBImage img,
MTBLevelsetMembership phi)
Initialize the energy object. |
boolean |
MTBLevelsetMembership.isValid(MTBImage invalidImg,
int x,
int y,
int z)
returns true, if pixel/voxel is valid. |
void |
LevelsetSegmentationNonPDE.setInImg(MTBImage value)
Set value of inImg. |
void |
LevelsetSegmentationNonPDE.setInitBinImg(MTBImage value)
Set value of initBinImg. |
void |
LevelsetSegmentationNonPDE.setInitLabelImg(MTBImage value)
Set value of initLabelImg. |
void |
LevelsetSegmentationNonPDE.setIntermediateLS(MTBImage intermediateLS)
|
void |
LevelsetSegmentationNonPDE.setInvalidImg(MTBImage value)
Set value of invalidImg. |
void |
LevelsetSegmentationNonPDE.setResultContourImage(MTBImage value)
Set value of ResultContourImage. |
void |
LevelsetSegmentationNonPDE.setResultImage(MTBImage value)
Set value of ResultImage. |
Constructors in de.unihalle.informatik.MiToBo.segmentation.levelset.nonPDE with parameters of type MTBImage | |
---|---|
LevelsetSolveNonPDE(MTBGenericEnergyNonPDE energy,
MTBLevelsetMembership phi,
int maxIter,
int spacingIntermediate,
MTBImage invalidImg,
boolean preserveTopology)
Constructor. |
|
MTBCVFittingEnergyNonPDE(MTBImage img,
MTBLevelsetMembership phi,
double lambdaBg,
double lambdaFg)
Construct an energy object with the initial level set function phi
realizing the fitting term of the Chan-Vese energy to segment img . |
|
MTBLevelsetMembership(int sizeX,
int sizeY,
int sizeZ,
MTBImage invalidImg)
Constructs a two phase level set function which is initialiazed with a circle or sphere of radius 0.5*(sizeX+sizeY+sizeZ)/3. |
|
MTBLevelsetMembership(int sizeX,
int sizeY,
int sizeZ,
MTBImage img,
int threshold,
MTBImage invalidImg)
Creates a two phase level set function from an image via thresholding. |
|
MTBLevelsetMembership(int sizeX,
int sizeY,
MTBRegion2DSet regions,
MTBImage invalidImg,
boolean multiphase)
Constructor for given size which is initialized from a MTBRegion2DSet for a 2D level set function. |
|
MTBLevelsetMembership(int sizeX,
int sizeY,
Vector<MTBRegion2D> regions,
MTBImage invalidImg,
boolean multiphase)
Constructor for given size which is initialized from a list of 2D regions for a 2D level set function. |
|
MTBLevelsetMembership(MTBImage initLabelImg,
MTBImage invalidImg)
Constructor for a two phase level set function from a label image. |
|
MTBLevelsetMembership(MTBImage initLabelImg,
MTBImage invalidImg,
boolean multiphase)
Constructor for a level set function from a label image. |
|
MTBMeijeringFittingEnergyNonPDE(MTBImage img,
MTBLevelsetMembership phi)
constructor |
Uses of MTBImage in de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.datatypes |
---|
Methods in de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.datatypes that return MTBImage | |
---|---|
MTBImage |
MTBLevelsetFunctionPDE.getMask(int class_)
|
Uses of MTBImage in de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.solver |
---|
Methods in de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.solver with parameters of type MTBImage | |
---|---|
void |
LevelsetSolverPDE.setInputImg(MTBImage img)
Set input image. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.segmentation.regions.convert |
---|
Methods in de.unihalle.informatik.MiToBo.segmentation.regions.convert that return MTBImage | |
---|---|
MTBImage |
Region2DSetFromLabelimage.getLabelImage()
Get reference to the current Label image. |
Methods in de.unihalle.informatik.MiToBo.segmentation.regions.convert with parameters of type MTBImage | |
---|---|
void |
Region2DSetFromLabelimage.setLabelImage(MTBImage labelImage)
Set Label image. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.segmentation.regions.filling |
---|
Methods in de.unihalle.informatik.MiToBo.segmentation.regions.filling that return MTBImage | |
---|---|
MTBImage |
FillHoles2D.getInputImage()
Get reference to the current input image. |
MTBImage |
FillHoles2D.getResultImage()
Get the resulting image. |
Methods in de.unihalle.informatik.MiToBo.segmentation.regions.filling with parameters of type MTBImage | |
---|---|
void |
FillHoles2D.setInputImage(MTBImage inputImage)
Set input image. |
protected void |
FillHoles2D.setResultImage(MTBImage resultImage)
Set the result image. |
Constructors in de.unihalle.informatik.MiToBo.segmentation.regions.filling with parameters of type MTBImage | |
---|---|
FillHoles2D(MTBImage img)
Constructor with input image. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.segmentation.regions.labeling |
---|
Methods in de.unihalle.informatik.MiToBo.segmentation.regions.labeling that return MTBImage | |
---|---|
MTBImage |
LabelComponentsSequential.getColorImage()
Get image of randomly colored regions, if the create-color-image-flag was set to true. |
MTBImage |
LabelComponentsSequential.getInputImage()
Get reference to the current input image. |
MTBImage |
LabelComponentsSequential.getLabelImage()
Get image of region labels (of type MTB_INT), if the create-label-image-flag was set to true. |
Methods in de.unihalle.informatik.MiToBo.segmentation.regions.labeling with parameters of type MTBImage | |
---|---|
protected MTBRegion2DSet |
LabelComponentsSequential.labelComponents(MTBImage img,
boolean diagonalNeighbors)
Sequential component labeling |
protected void |
LabelComponentsSequential.setColorImage(MTBImage colorImage)
Add the label image to the parameter object |
void |
LabelComponentsSequential.setInputImage(MTBImage inputImage)
Set a new input image. |
protected void |
LabelComponentsSequential.setLabelImage(MTBImage labelImage)
Set image of region labels |
Constructors in de.unihalle.informatik.MiToBo.segmentation.regions.labeling with parameters of type MTBImage | |
---|---|
LabelComponentsSequential(MTBImage img,
boolean diagonalNeighbors)
Constructor |
Uses of MTBImage in de.unihalle.informatik.MiToBo.segmentation.regions.mser |
---|
Methods in de.unihalle.informatik.MiToBo.segmentation.regions.mser with parameters of type MTBImage | |
---|---|
void |
DetectMSERs.setInputImage(MTBImage img)
Set input image to process. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.segmentation.snakes.datatypes |
---|
Methods in de.unihalle.informatik.MiToBo.segmentation.snakes.datatypes that return MTBImage | |
---|---|
MTBImage |
MTBSnake.getMask(int class_)
|
MTBImage |
MTBSnake.toMTBImage(String file,
MTBImage img)
Method to draw and save the snake in a given MTBImage. |
Methods in de.unihalle.informatik.MiToBo.segmentation.snakes.datatypes with parameters of type MTBImage | |
---|---|
static MTBPolygon2DSet |
MTBSnake.convertRegionsToSnakes(MTBImage image)
Converts the regions of a label/binary image into a set of snakes. |
void |
MTBSnake.drawPolygon(MTBImage img,
int color)
Draw snake into an image. |
void |
MTBSnake.drawPolygonPoints(MTBImage img,
int color,
int mode)
Draw snake points into an image (as crosses). |
MTBImage |
MTBSnake.toMTBImage(String file,
MTBImage img)
Method to draw and save the snake in a given MTBImage. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.segmentation.snakes.energies |
---|
Constructors in de.unihalle.informatik.MiToBo.segmentation.snakes.energies with parameters of type MTBImage | |
---|---|
MTBSnakeEnergyCD_CVRegionFit(MTBImage im,
double lin,
double lout)
Default constructor. |
|
MTBSnakeEnergyCDIB_Gradient(MTBImage img)
Constructor to create a new SnakeExternalEnergyGradient object. |
|
MTBSnakeEnergyCDIB_GVF2D(MTBImage _image,
int _numIterations)
Constructor to create a new SnakeExternalEnergyGVF2D object. |
|
MTBSnakeEnergyCDIB_Intensity(MTBImage _image)
Constructor to create a new SnakeExternalEnergyIntensity object. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize |
---|
Fields in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize declared as MTBImage | |
---|---|
protected MTBImage |
SnakeOptimizer.inImg
Input image to be segmented. |
protected MTBImage |
SnakeOptimizerSingle.workingImage
Image on which to actually do the segmentation. |
Methods in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize that return MTBImage | |
---|---|
MTBImage |
SnakeOptimizer.getInputImage()
Returns input image. |
MTBImage |
SnakeOptimizerSingle.getWorkingImage()
|
MTBImage |
SnakeOptimizerCoupled.getWorkingImage()
|
abstract MTBImage |
SnakeOptimizer.getWorkingImage()
Returns working image. |
MTBImage |
SnakeOptimizerSingle.normalizeInputImage(MTBImage inimg)
Normalizes image intensities according to normalization mode of operator. |
Methods in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize with parameters of type MTBImage | |
---|---|
MTBImage |
SnakeOptimizerSingle.normalizeInputImage(MTBImage inimg)
Normalizes image intensities according to normalization mode of operator. |
void |
SnakeOptimizer.setInputImage(MTBImage img)
Specify an input image for the segmentation. |
Constructors in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize with parameters of type MTBImage | |
---|---|
SnakeOptimizerCoupled(MTBImage img,
MTBPolygon2DSet initSnakes,
SnakeOptimizerSingle sopt,
boolean[] activeArray)
Default constructor. |
|
SnakeOptimizerSingleVarCalc(MTBImage img,
MTBPolygon2DSet initSnake,
MTBSet_SnakeEnergyDerivable energs,
MTBGammaUpdate gamUpdater,
Double gammas,
MTBTermination tc,
Boolean resample,
Double segLength)
Default constructor with parameters. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.segmentation.thresholds |
---|
Fields in de.unihalle.informatik.MiToBo.segmentation.thresholds declared as MTBImage | |
---|---|
protected MTBImage |
HysteresisThresholding.inImg
Image to process. |
Methods in de.unihalle.informatik.MiToBo.segmentation.thresholds that return MTBImage | |
---|---|
MTBImage |
ImgThresh.getDestinationImage()
Get value of Input argument DestinationImage. |
MTBImage |
ImgThresh.getInputImage()
Get input image |
MTBImage |
ImgThresh.getResultImage()
Get the result image |
protected MTBImage |
ImgThresh.threshold(MTBImage img,
double thresh,
double upperThres,
double _fgValue,
double _bgValue,
boolean _actualSliceOnly)
Apply threshold to an MTBImage and create a new thresholded MTBImage. |
Methods in de.unihalle.informatik.MiToBo.segmentation.thresholds with parameters of type MTBImage | |
---|---|
protected static void |
HysteresisThresholding.labelNeighbors(MTBImage img,
MTBImage result,
boolean[][] procMap,
int x,
int y,
double tl,
double th)
Function for recursive labeling of foreground pixels. |
void |
ImgThresh.setDestinationImage(MTBImage img)
Set value of Input argument DestinationImage. |
void |
ImgThreshNiblack.setInputImage(MTBImage img)
Set input image. |
void |
ImgThresh.setInputImage(MTBImage img)
Set input image |
void |
HysteresisThresholding.setInputImage(MTBImage image)
Set input image. |
protected void |
ImgThresh.setResultImage(MTBImage img)
Set result image. |
protected MTBImage |
ImgThresh.threshold(MTBImage img,
double thresh,
double upperThres,
double _fgValue,
double _bgValue,
boolean _actualSliceOnly)
Apply threshold to an MTBImage and create a new thresholded MTBImage. |
protected void |
ImgThresh.threshold(MTBImage img,
MTBImage threshImg,
double thresh,
double upperThresh,
double fgValue,
double bgValue,
boolean actualSliceOnly)
Apply threshold to an MTBImage and write results to a destination MTBImage. |
Constructors in de.unihalle.informatik.MiToBo.segmentation.thresholds with parameters of type MTBImage | |
---|---|
CalcGlobalThreshOtsu(MTBImage img)
Default constructor with input image as argument. |
|
ImgThresh(MTBImage img,
double thres)
Constructor for thresholding using 255 as foreground and 0 as background value. |
|
ImgThresh(MTBImage img,
double thres,
double fg,
double bg)
Constructor for thresholding using 'fgValue' as foreground and 'bgValue' as background value. |
|
ImgThreshNiblack(MTBImage _inImg,
ImgThreshNiblack.Mode mode,
double k,
double R,
int wSize,
int vcNB,
double vcThresh,
MTBImageByte _mask)
Constructor. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.tools.image |
---|
Fields in de.unihalle.informatik.MiToBo.tools.image declared as MTBImage | |
---|---|
protected MTBImage |
ImageContrastReducer.inImg
Input image. |
protected MTBImage |
ImageContrastReducer.resultImg
Result image. |
Methods in de.unihalle.informatik.MiToBo.tools.image that return MTBImage | |
---|---|
MTBImage |
ImageDimensionReducer.getInImg()
Get value of Input argument inImg. |
MTBImage |
ImageContrastReducer.getInImg()
Get input image. |
MTBImage |
ImageValueTools.getInputImage()
|
MTBImage |
ImageConverter.getInputImg()
Get input image |
MTBImage |
ImageValueTools.getResultImage()
|
MTBImage |
ImageDimensionReducer.getResultImg()
Get value of Output argument resultImg. |
MTBImage |
ImageConverter.getResultImg()
Get result image |
MTBImage |
ImageContrastReducer.getResultImg()
Get result image. |
Methods in de.unihalle.informatik.MiToBo.tools.image with parameters of type MTBImage | |
---|---|
protected void |
ImageValueTools.fill(MTBImage img,
Color rgbvalue)
|
protected void |
ImageValueTools.fill(MTBImage img,
double grayvalue)
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static void |
ImageValueTools.fillImage(MTBImage img,
Color rgbvalue,
MTBOperator callingOperator)
Fill the image with a RGB color value. |
static void |
ImageValueTools.fillImage(MTBImage img,
double grayvalue,
MTBOperator callingOperator)
Fill the specified image with a gray value. |
protected void |
ImageValueTools.invert(MTBImage img)
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static void |
ImageValueTools.invertImage(MTBImage img,
MTBOperator callingOperator)
Invert the specified image. |
protected void |
ImageValueTools.normFromTo(MTBImage img)
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static void |
ImageValueTools.normImageFromTo(MTBImage img,
double oldMinVal,
double oldMaxVal,
double newMinVal,
double newMaxVal,
MTBOperator callingOperator)
Normalize the image values to range [lowerBound, upperBound]. |
static void |
ImageValueTools.normImageTo(MTBImage img,
double lowerBound,
double upperBound,
MTBOperator callingOperator)
Normalize the image values to range [lowerBound, upperBound]. |
protected void |
ImageValueTools.normTo(MTBImage img,
double lowerBound,
double upperBound)
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void |
ImageDimensionReducer.setInImg(MTBImage img)
Set value of Input argument inImg. |
void |
ImageContrastReducer.setInImg(MTBImage img)
Set input image. |
void |
ImageValueTools.setInputImage(MTBImage _inputImage)
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void |
ImageConverter.setInputImg(MTBImage _inputImg1)
Set input image |
protected void |
ImageDimensionReducer.setResultImg(MTBImage img)
Set value of Output argument resultImg. |
protected void |
ImageConverter.setResultImg(MTBImage resultImg1)
Set result image |
Constructors in de.unihalle.informatik.MiToBo.tools.image with parameters of type MTBImage | |
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ImageConverter(MTBImage _inputImg,
MTBImage.MTBImageType _outputType,
boolean _scaleValues,
Boolean _channelsAreRGB)
Constructor |
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ImageDimensionReducer(MTBImage img,
boolean reduceX,
boolean reduceY,
boolean reduceZ,
boolean reduceT,
boolean reduceC,
ImageDimensionReducer.ReducerMethod method)
Constructor |
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ImageValueTools(MTBImage img)
Constructor. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.transforms |
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Methods in de.unihalle.informatik.MiToBo.transforms that return MTBImage | |
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protected MTBImage[] |
UndecimatedWaveletTransform.aTrousDWT(MTBImage _img,
int _Jmax,
MTBImage[] _kernels)
A trous DWT |
protected MTBImage |
UndecimatedWaveletTransform.conv(MTBImage img,
MTBImage[] scaleOneKernels,
int j)
Convolve input image with an 'a trous' kernel (zeros inserted) given the original kernel and scale j |
protected MTBImage |
UndecimatedWaveletTransform.createGaussianNoiseImage(double mean,
double sigma,
double clippingFactor,
int bins,
int sizeX,
int sizeY,
int sizeZ,
int sizeT,
int sizeC)
Create an image with Gaussian noise |
MTBImage |
UndecimatedWaveletTransform.getImg()
Get reference to the (input) image. |
protected MTBImage[] |
UndecimatedWaveletTransform.getKernels()
Get smoothing kernels |
protected MTBImage |
UndecimatedWaveletTransform.inverseATrousDWT(MTBImage[] dwt)
Inverse a trous DWT |
Methods in de.unihalle.informatik.MiToBo.transforms with parameters of type MTBImage | |
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protected MTBImage[] |
UndecimatedWaveletTransform.aTrousDWT(MTBImage _img,
int _Jmax,
MTBImage[] _kernels)
A trous DWT |
protected MTBImage[] |
UndecimatedWaveletTransform.aTrousDWT(MTBImage _img,
int _Jmax,
MTBImage[] _kernels)
A trous DWT |
protected MTBImage |
UndecimatedWaveletTransform.conv(MTBImage img,
MTBImage[] scaleOneKernels,
int j)
Convolve input image with an 'a trous' kernel (zeros inserted) given the original kernel and scale j |
protected MTBImage |
UndecimatedWaveletTransform.conv(MTBImage img,
MTBImage[] scaleOneKernels,
int j)
Convolve input image with an 'a trous' kernel (zeros inserted) given the original kernel and scale j |
protected void |
UndecimatedWaveletTransform.denoise(MTBImage img,
double sigma)
Denoise wavelet coefficients using Jeffrey's noninformative prior for a given sigma of noise |
protected void |
UndecimatedWaveletTransform.denoiseDWTJeffreys(MTBImage[] dwt,
double scaleOneSigma,
double[] sigmaScales)
Denoise wavelet coefficients using Jeffrey's noninformative prior [..] |
protected double |
UndecimatedWaveletTransform.get3SigClippedStdDev(MTBImage img)
Get the standard deviation (sigma) of an image only using values clipped by 3*sigma from a first estimate of sigma |
protected double |
UndecimatedWaveletTransform.getStdDev(MTBImage img)
Get standard deviation of the image |
protected MTBImage |
UndecimatedWaveletTransform.inverseATrousDWT(MTBImage[] dwt)
Inverse a trous DWT |
void |
UndecimatedWaveletTransform.setImg(MTBImage img)
Set the image domain image |
protected void |
UndecimatedWaveletTransform.setKernels(MTBImage[] kernels)
Set smoothing kernels |
Constructors in de.unihalle.informatik.MiToBo.transforms with parameters of type MTBImage | |
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UndecimatedWaveletTransform(MTBImage _img,
int _Jmax,
boolean _denoise)
Constructor with default Gaussian kernel [1/16, 1/4, 3/8, 1/4, 1/16] for at most dimension x, y (and z if present). |
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UndecimatedWaveletTransform(MTBImage _img,
int _Jmax,
boolean _denoise,
MTBImage[] _kernels)
Constructor. |
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UndecimatedWaveletTransform(MTBImage _img,
int _Jmax,
boolean _denoise,
MTBImage[] _kernels)
Constructor. |
Uses of MTBImage in de.unihalle.informatik.MiToBo.visualization.drawing |
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Fields in de.unihalle.informatik.MiToBo.visualization.drawing declared as MTBImage | |
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MTBImage |
DrawTracks2D.inputImage
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protected MTBImage |
DrawTracks2D.trackImage
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Methods in de.unihalle.informatik.MiToBo.visualization.drawing that return MTBImage | |
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MTBImage |
DrawRegion2DSet.getResultImage()
Get the resulting region image. |
MTBImage |
DrawPolygon2DSet.getResultImage()
Get the resulting region image. |
MTBImage |
DrawRegion2DSet.getTargetImage()
Get the target image to which the regions are drawn, if one was specified. |
MTBImage |
DrawTracks2D.getTrackImage()
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Methods in de.unihalle.informatik.MiToBo.visualization.drawing with parameters of type MTBImage | |
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protected void |
DrawTracks2D.drawSpot(MTBImage img,
MTBRegion2D reg,
int t,
int c,
int color)
Draw region to an image at time=t and channel=c with specified color. |
protected void |
DrawTracks2D.drawSqare(MTBImage img,
MTBRegion2D reg,
int t,
int c,
int color,
int radius)
Draw square to an image at time=t and channel=c with specified color and size=2* radius +1. |
protected void |
DrawTracks2D.drawTrajectories(Jama.Matrix oldP,
Jama.Matrix newP,
int t,
int t_last,
int c,
MTBImage img,
int color)
Draw trajectory between two points at the given and all later timepoints until t_last |
protected void |
DrawRegion2DSet.setResultImage(MTBImage image)
Set the resulting image. |
void |
DrawRegion2DSet.setTargetImage(MTBImage targetimage)
Specify a target image to which the regions are drawn, specify 'null' to create a new image |
Constructors in de.unihalle.informatik.MiToBo.visualization.drawing with parameters of type MTBImage | |
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DrawRegion2DSet(DrawRegion2DSet.DrawType dtype,
MTBRegion2DSet regions,
MTBImage targetimage)
Simple constructor to draw the most common region image types to a given image: |
Uses of MTBImage in mtb_io |
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Fields in mtb_io declared as MTBImage | |
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protected MTBImage |
Save_Image_MTB.img
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