|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Uses of MTBImageByte in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages |
---|
Fields in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages declared as MTBImageByte | |
---|---|
protected MTBImageByte |
SegResult_Particles.binMask
Binary segmentation mask. |
protected MTBImageByte |
SegResult_Nuclei.binMask
Binary segmentation mask. |
protected MTBImageByte |
SegResult_Cytoplasm.labelImage
Label mask. |
Methods in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages that return MTBImageByte | |
---|---|
MTBImageByte |
SegResult_Cytoplasm.getLabelImage()
Returns label mask with segmentation result. |
MTBImageByte |
SegResult_Particles.getMask()
Returns binary mask with segmentation result. |
MTBImageByte |
SegResult_Nuclei.getMask()
Returns binary mask with segmentation result. |
Methods in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages with parameters of type MTBImageByte | |
---|---|
void |
SegResult_Nuclei.setMask(MTBImageByte m)
Specify binary mask of nuclei. |
Constructors in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages with parameters of type MTBImageByte | |
---|---|
SegResult_Cytoplasm(String imgName,
MTBPolygon2DSet conts,
MTBImageByte labels,
int count,
double avgsize)
Deprecated. |
|
SegResult_Cytoplasm(String imgName,
MTBPolygon2DSet conts,
MTBImageByte labels,
int count,
int[] sizes,
double avgsize)
Default constructor. |
|
SegResult_Nuclei(String imgName,
int channel,
MTBImageByte mask,
MTBImage labels,
MTBRegion2DSet regs,
int count,
double avgsize)
Default constructor. |
|
SegResult_Particles(String imgName,
int ch,
MTBRegion2DSet regions,
MTBImageByte mask,
int count,
double avgsize)
Default constructor. |
Uses of MTBImageByte in de.unihalle.informatik.MiToBo.apps.neurites2D |
---|
Methods in de.unihalle.informatik.MiToBo.apps.neurites2D that return MTBImageByte | |
---|---|
MTBImageByte |
NeuriteExtractor2D.drawLine2D(Line2D.Double line,
Point2D.Double point)
Draws a 2D line into the neuron image. |
MTBImageByte |
NeuriteExtractor2D.getNeuronImage()
Get input image of the binary neuron. |
Methods in de.unihalle.informatik.MiToBo.apps.neurites2D with parameters of type MTBImageByte | |
---|---|
void |
NeuriteExtractor2D.setNeuronImage(MTBImageByte _neuronImage)
Set input image of the binary neuron. |
Constructors in de.unihalle.informatik.MiToBo.apps.neurites2D with parameters of type MTBImageByte | |
---|---|
NeuriteExtractor2D(MTBImageByte _neuronImage,
NeuriteExtractor2D.NeuronColor _neuronColor,
int _neuriteMaskSize,
int _maxSpineLength,
org.rosuda.JRI.Rengine _rEngine,
String _outputDir)
Constructor to create a new neurite extraction object. |
Uses of MTBImageByte in de.unihalle.informatik.MiToBo.apps.nuclei2D |
---|
Methods in de.unihalle.informatik.MiToBo.apps.nuclei2D that return MTBImageByte | |
---|---|
protected MTBImageByte |
NucleusDetector2D.detectWithLocalContrastEnhancement()
Detect nuclei by first improving image contrast. |
protected MTBImageByte |
NucleusDetector2D.detectWithNiblack()
Detects nuclei based on Niblack thresholding. |
protected MTBImageByte |
NucleusDetector2D.detectWithOtsu_erodedilate()
Detects nuclei based on Otsu thresholding and a combination of erosion/ dilation. |
protected MTBImageByte |
NucleusDetector2D.detectWithOtsu_openclose()
Detects nuclei based on Otsu thresholding and a combination of opening and closing. |
Methods in de.unihalle.informatik.MiToBo.apps.nuclei2D with parameters of type MTBImageByte | |
---|---|
void |
NucleusSeparator2DPeakSearch_RegionSeparator.setInImg(MTBImageByte _inImg)
Specify binary input image. |
void |
NuclearParticleDetector2D.setInputImage(MTBImageByte _inputImage)
Set input image. |
Constructors in de.unihalle.informatik.MiToBo.apps.nuclei2D with parameters of type MTBImageByte | |
---|---|
NuclearParticleDetector2D(MTBImageByte _inputImage,
Integer _nucChannel,
Integer _partChannel,
Boolean _correctGamma,
Double _gamma,
Boolean _filterImage,
NucleusDetector2D _nucDetector,
ParticleDetectorUWT2D _partDetector)
|
|
NucleusSeparator2DPeakSearch_RegionSeparator(MTBImageByte image)
Constructor with input image. |
Uses of MTBImageByte in de.unihalle.informatik.MiToBo.apps.particles2D |
---|
Methods in de.unihalle.informatik.MiToBo.apps.particles2D with parameters of type MTBImageByte | |
---|---|
void |
ParticleDetectorUWT2D.setExcludeMask(MTBImageByte mask)
Specify exclude mask. |
void |
MultiChannelParticleAnalyzer2D.setNucleiMask(MTBImageByte mask)
Specify nuclei mask. |
Uses of MTBImageByte in de.unihalle.informatik.MiToBo.apps.xylem |
---|
Methods in de.unihalle.informatik.MiToBo.apps.xylem that return MTBImageByte | |
---|---|
MTBImageByte |
XylemGrower.getGrownRegions()
Returns a MTBImageByte image after growing. |
MTBImageByte |
XylemInitialSegmentation.getInitSegImageByte()
Return the resulting initial segmentation image. |
MTBImageByte |
XylemGrower.getResultXylemRegions()
Return the binary image after the post processing of the grown region image. |
MTBImageByte |
XylemGrower.getSeedRegions()
|
Methods in de.unihalle.informatik.MiToBo.apps.xylem with parameters of type MTBImageByte | |
---|---|
void |
XylemGrower.setGrownRegions(MTBImageByte imageByte)
|
void |
XylemGrower.setInitalSegmentation(MTBImageByte image)
|
void |
XylemInitialSegmentation.setInitSegImageByte(MTBImageByte initSegImageByte)
|
void |
XylemGrower.setSeedImage(MTBImageByte seedRegions)
|
void |
XylemGrower.setXylemImage(MTBImageByte hsxMTBImage)
Set the Hue/Saturation/{Intensity|Brightness|Value}- MTBImage . |
void |
XylemGrower.setXylemResultRegions(MTBImageByte regions)
Set the binary image after the morphological processing on the grown region image. |
Constructors in de.unihalle.informatik.MiToBo.apps.xylem with parameters of type MTBImageByte | |
---|---|
XylemGrower(MTBImageByte binaryImage,
MTBImageByte hsxImage,
XylemGrower.GrowingMode linkageMode)
|
|
XylemInitialSegmentation(MTBImageByte grayScaleXylemImage)
|
Uses of MTBImageByte in de.unihalle.informatik.MiToBo.core.datatypes |
---|
Methods in de.unihalle.informatik.MiToBo.core.datatypes that return MTBImageByte | |
---|---|
MTBImageByte |
MTBNeuriteSkelGraph.toByteImage()
Draw the skeleton graph into a binary image. |
MTBImageByte |
MTBRegion2D.toMTBImageByte(String file,
int width,
int height)
Method to save the region on a binary image with specific width and height. |
MTBImageByte |
MTBBorder2D.toMTBImageByte(String file,
int width,
int height)
Draws a border with all inner borders to a binary image with given size. |
MTBImageByte |
MTBRegion2D.toMTBImageByte(String file,
int width,
int height,
int color)
Method to save the region on a binary image with specific width, height and color. |
Methods in de.unihalle.informatik.MiToBo.core.datatypes with parameters of type MTBImageByte | |
---|---|
boolean |
MTBNeuriteSkelGraph.buildSkeletonGraph(int x,
int y,
int w,
int h,
MTBImageByte skeletonImg,
int skelColor)
Build the skeleton graph from a given binary skeleton image and a given starting point to build up the graph. |
MTBTableModel |
MTBNeuriteSkelGraph.toSWC(String fileName,
MTBImageByte neuronImage)
Method to save neurite skeleton graph as SWC file. |
Uses of MTBImageByte in de.unihalle.informatik.MiToBo.core.datatypes.images |
---|
Methods in de.unihalle.informatik.MiToBo.core.datatypes.images that return MTBImageByte | |
---|---|
static MTBImageByte |
MTBImage.createMTBImageByte(int sizeX,
int sizeY,
int sizeZ,
int sizeT,
int sizeC,
byte[][] data)
Creates an image of type MTBImage.MTBImageType.MTB_BYTE from
the given data array. |
Uses of MTBImageByte in de.unihalle.informatik.MiToBo.core.datatypes.neurites |
---|
Methods in de.unihalle.informatik.MiToBo.core.datatypes.neurites that return MTBImageByte | |
---|---|
MTBImageByte |
MTBNeurite2D.drawLine2D(Line2D.Double line,
Point2D.Double point,
MTBImageByte tmpNeuronImg)
Draws a 2D line into the neuron image. |
Methods in de.unihalle.informatik.MiToBo.core.datatypes.neurites with parameters of type MTBImageByte | |
---|---|
MTBImageByte |
MTBNeurite2D.drawLine2D(Line2D.Double line,
Point2D.Double point,
MTBImageByte tmpNeuronImg)
Draws a 2D line into the neuron image. |
Uses of MTBImageByte in de.unihalle.informatik.MiToBo.enhance |
---|
Constructors in de.unihalle.informatik.MiToBo.enhance with parameters of type MTBImageByte | |
---|---|
TopHatContrastEnhancement(MTBImageByte _inputImage,
Integer _wthMaskSize,
Integer _bthMaskSize)
Constructor to create a new IlluminationCorrection object. |
Uses of MTBImageByte in de.unihalle.informatik.MiToBo.filters.linear.anisotropic |
---|
Methods in de.unihalle.informatik.MiToBo.filters.linear.anisotropic that return MTBImageByte | |
---|---|
MTBImageByte |
OrientedFilter2DBatchAnalyzer.getIndexMap()
Get map of indices of maximal responses. |
Uses of MTBImageByte in de.unihalle.informatik.MiToBo.filters.vesselness |
---|
Fields in de.unihalle.informatik.MiToBo.filters.vesselness declared as MTBImageByte | |
---|---|
protected MTBImageByte |
MPMFFilter2D.resultVesselMap
Resulting binary vessel map. |
protected MTBImageByte |
MFFDOGMultiScaleFilter2D.resultVesselMap
Resulting binary vessel map. |
protected MTBImageByte |
MFFDOGFilter2D.resultVesselMap
Final vessel map. |
Methods in de.unihalle.informatik.MiToBo.filters.vesselness that return MTBImageByte | |
---|---|
MTBImageByte |
MPMFFilter2D.getBinaryResultMap()
Returns the final binary map. |
MTBImageByte |
MFFDOGFilter2D.getResultVesselMap()
Get result. |
Uses of MTBImageByte in de.unihalle.informatik.MiToBo.morphology |
---|
Methods in de.unihalle.informatik.MiToBo.morphology that return MTBImageByte | |
---|---|
protected MTBImageByte |
ComponentPostprocess.EraseLargeComponents(MTBImageByte binIP,
int maxComponentSize)
Function to remove large components from a binary image. |
protected MTBImageByte |
ComponentPostprocess.eraseNonCompactComponents(MTBImageByte binImage,
double threshold)
Function to remove all non compact/circular components of a binary image. |
protected MTBImageByte |
ComponentPostprocess.EraseRoundComponents(MTBImageByte binImage,
double threshold)
Remove components with small eccentricity. |
protected MTBImageByte |
ComponentPostprocess.EraseSmallComponents(MTBImageByte binIP,
int minComponentSize)
Function to remove small components from a binary image. |
MTBImageByte |
DistanceTransform.getInImg()
Get the input image. |
MTBImageByte |
ComponentPostprocess.getResultImage()
Get the result image after applying operator. |
protected MTBImageByte |
ComponentPostprocess.LinkAdjacentComponents(MTBImageByte binIP)
Function for linking adjacent components/regions in a binary image. |
protected MTBImageByte |
ComponentPostprocess.LinkAdjacentPixels(MTBImageByte binIP,
int maxDist)
Function for linking adjacent pixels in a binary image. |
protected MTBImageByte |
ComponentPostprocess.VoronoiExpandComponents(MTBImageByte binImg,
int maxDist)
Dilate components, but avoid merges. |
Methods in de.unihalle.informatik.MiToBo.morphology with parameters of type MTBImageByte | |
---|---|
protected MTBImageByte |
ComponentPostprocess.EraseLargeComponents(MTBImageByte binIP,
int maxComponentSize)
Function to remove large components from a binary image. |
protected MTBImageByte |
ComponentPostprocess.eraseNonCompactComponents(MTBImageByte binImage,
double threshold)
Function to remove all non compact/circular components of a binary image. |
protected MTBImageByte |
ComponentPostprocess.EraseRoundComponents(MTBImageByte binImage,
double threshold)
Remove components with small eccentricity. |
protected MTBImageByte |
ComponentPostprocess.EraseSmallComponents(MTBImageByte binIP,
int minComponentSize)
Function to remove small components from a binary image. |
protected MTBImageByte |
ComponentPostprocess.LinkAdjacentComponents(MTBImageByte binIP)
Function for linking adjacent components/regions in a binary image. |
protected MTBImageByte |
ComponentPostprocess.LinkAdjacentPixels(MTBImageByte binIP,
int maxDist)
Function for linking adjacent pixels in a binary image. |
void |
DistanceTransform.setInImg(MTBImageByte inImg)
Set the input image. |
protected MTBImageByte |
ComponentPostprocess.VoronoiExpandComponents(MTBImageByte binImg,
int maxDist)
Dilate components, but avoid merges. |
Constructors in de.unihalle.informatik.MiToBo.morphology with parameters of type MTBImageByte | |
---|---|
DistanceTransform(MTBImageByte image,
DistanceTransform.DistanceMetric dm,
DistanceTransform.ForegroundColor fg)
Constructor to create a new DistanceTransform object. |
Uses of MTBImageByte in de.unihalle.informatik.MiToBo.segmentation.contours.extraction |
---|
Methods in de.unihalle.informatik.MiToBo.segmentation.contours.extraction that return MTBImageByte | |
---|---|
protected MTBImageByte |
ContourOnLabeledComponents.calcContours()
Get all inner- and outer-contours for the given regions. |
MTBImageByte |
ContourOnLabeledComponents.getInputImage()
Get reference to the current input image. |
MTBImageByte |
ContourOnLabeledComponents.getResultImage()
Get reference to the binary image with the calculated contours. |
protected MTBImageByte |
ContourOnLabeledComponents.toMTBImageByte()
Method to save all contours from the regions on a binary image with specific width and height. |
Methods in de.unihalle.informatik.MiToBo.segmentation.contours.extraction with parameters of type MTBImageByte | |
---|---|
protected int |
ContourOnLabeledComponents.findNextPoint(Point2D.Double Xc,
int dir,
MTBImageByte theImage)
Find direction to next pixel in specific direction from the last pixel. |
protected MTBContour2DSet |
ContourOnLabeledComponents.getOuterContours(MTBRegion2DSet theRegions,
MTBImageByte theImage)
Calculate the outer contours of the given regions in a image. |
void |
ContourOnLabeledComponents.setInputImage(MTBImageByte inImg)
Set reference to the current input image. |
void |
BordersOnLabeledComponents.setInputImage(MTBImageByte inImg)
Set input image. |
protected MTBContour2D |
ContourOnLabeledComponents.traceContour(int xS,
int yS,
MTBImageByte theImage)
Trace contour, starting at (xS, yS) in direction dS. |
Constructors in de.unihalle.informatik.MiToBo.segmentation.contours.extraction with parameters of type MTBImageByte | |
---|---|
BordersOnLabeledComponents(MTBImageByte inImg,
MTBRegion2DSet inRegions,
MTBBorder2D.BorderConnectivity con,
BordersOnLabeledComponents.BorderType type,
int minLength)
Constructor. |
|
ContourOnLabeledComponents(MTBImageByte inImg,
MTBRegion2DSet inRegions,
ContourOnLabeledComponents.ContourType type,
int length)
Constructor. |
Uses of MTBImageByte in de.unihalle.informatik.MiToBo.segmentation.evaluation |
---|
Constructors in de.unihalle.informatik.MiToBo.segmentation.evaluation with parameters of type MTBImageByte | |
---|---|
CalcStructureStatistics(MTBImageByte sMask,
MTBImageByte nMask,
MTBImageByte labelImg)
Default constructor. |
|
CalcStructureStatistics(MTBImageByte sMask,
MTBImageByte nMask,
MTBImageByte labelImg,
boolean ignoreNuclei)
Deprecated. |
Uses of MTBImageByte in de.unihalle.informatik.MiToBo.segmentation.levelset.nonPDE |
---|
Methods in de.unihalle.informatik.MiToBo.segmentation.levelset.nonPDE that return MTBImageByte | |
---|---|
MTBImageByte |
MTBLevelsetMembership.getMTBImage()
Creates a bi-level MTBImageByte of the level set function. |
MTBImageByte |
MTBLevelsetMembership.getMTBImageLabel()
Creates a MTBImageByte of the level set function. |
MTBImageByte |
LevelsetSolveNonPDE.getResultImage()
Get value of resultImage. |
Methods in de.unihalle.informatik.MiToBo.segmentation.levelset.nonPDE that return types with arguments of type MTBImageByte | |
---|---|
Vector<MTBImageByte> |
LevelsetSolveNonPDE.getIntermediateLS()
Get value of intermediateLS. |
Uses of MTBImageByte in de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.datatypes |
---|
Methods in de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.datatypes that return MTBImageByte | |
---|---|
MTBImageByte |
MTBLevelsetFunctionPDE.getBinaryMask()
Get a binary mask of the represented segmentation. |
Uses of MTBImageByte in de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.solver |
---|
Fields in de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.solver declared as MTBImageByte | |
---|---|
protected MTBImageByte |
LevelsetSolverPDE.intermediateResultStack
|
protected MTBImageByte |
LevelsetSolverPDE.resultMask
|
Fields in de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.solver with type parameters of type MTBImageByte | |
---|---|
protected Vector<MTBImageByte> |
LevelsetSolverPDE.intermediateResults
List of intermediate result segmentations. |
Methods in de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.solver that return MTBImageByte | |
---|---|
MTBImageByte |
LevelsetSolverPDE.getResultMask()
Get binary mask of segmentation result. |
Uses of MTBImageByte in de.unihalle.informatik.MiToBo.segmentation.snakes.datatypes |
---|
Methods in de.unihalle.informatik.MiToBo.segmentation.snakes.datatypes that return MTBImageByte | |
---|---|
MTBImageByte |
MTBSnake.toMTBImageByte(String file,
int w,
int h)
Method to draw and save the snake in a binary image. |
Uses of MTBImageByte in de.unihalle.informatik.MiToBo.segmentation.snakes.energies |
---|
Constructors in de.unihalle.informatik.MiToBo.segmentation.snakes.energies with parameters of type MTBImageByte | |
---|---|
MTBSnakeEnergyCDIB_Distance(MTBImageByte image,
DistanceTransform.DistanceMetric d,
DistanceTransform.ForegroundColor f)
Constructor to create a new SnakeExternalEnergyDistance object. |
Uses of MTBImageByte in de.unihalle.informatik.MiToBo.segmentation.thresholds |
---|
Fields in de.unihalle.informatik.MiToBo.segmentation.thresholds declared as MTBImageByte | |
---|---|
protected MTBImageByte |
HysteresisThresholding.resultImage
Resulting binarized image. |
Methods in de.unihalle.informatik.MiToBo.segmentation.thresholds that return MTBImageByte | |
---|---|
MTBImageByte |
ImgThreshNiblack.getResultImage()
Get the resulting thresholded image. |
MTBImageByte |
HysteresisThresholding.getResultImage()
Returns the result image. |
Constructors in de.unihalle.informatik.MiToBo.segmentation.thresholds with parameters of type MTBImageByte | |
---|---|
ImgThreshNiblack(MTBImage _inImg,
ImgThreshNiblack.Mode mode,
double k,
double R,
int wSize,
int vcNB,
double vcThresh,
MTBImageByte _mask)
Constructor. |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |