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java.lang.Objectde.unihalle.informatik.Alida.operator.ALDOperator
de.unihalle.informatik.MiToBo.core.operator.MTBOperator
de.unihalle.informatik.MiToBo.apps.neurites2D.NeuriteParticleDetector2D
@ALDAOperator(genericExecutionMode=ALL, level=APPLICATION, allowBatchMode=true) public class NeuriteParticleDetector2D
This operator detects particles of a neuron image, for example from FISH analysis. Particles in the complete image or inside the neurite regions of a given neurite set can be detected.
ParticleDetectorUWT2D
Nested Class Summary |
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Nested classes/interfaces inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
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de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode |
Field Summary |
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Fields inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
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completeDAG, name, operatorExecutionEventlistenerList, portHashAccess, verbose, versionProvider |
Constructor Summary | |
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NeuriteParticleDetector2D()
Standardconstructor. |
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NeuriteParticleDetector2D(Integer _particleChannel,
ParticleDetectorUWT2D _particleDetector,
MTBNeurite2DSet _neuriteSet,
Boolean _verbose)
Constructor. |
Method Summary | |
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MTBRegion2DSet |
getDetectedParticles()
Get regions of detected particles. |
MTBNeurite2DSet |
getNeuriteSet()
Get the input set of neurites. |
Integer |
getParticleChannel()
Get image channel including particles. |
ParticleDetectorUWT2D |
getParticleDetector()
Get particle detector. |
protected void |
operate()
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void |
setNeuriteSet(MTBNeurite2DSet _neuriteSet)
Set the input set of neurites. |
void |
setParticleImage(MTBImage particleImage)
Set particle image for particle detector. |
Methods inherited from class de.unihalle.informatik.MiToBo.core.operator.MTBOperator |
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readResolve |
Methods inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
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addOperatorExecutionProgressEventListener, fieldContained, fireOperatorExecutionProgressEvent, getALDPortHashAccessKey, getConstructionMode, getHidingMode, getInInoutNames, getInInoutNames, getInNames, getInOutNames, getMissingRequiredInputs, getName, getNumParameters, getOutInoutNames, getOutNames, getParameter, getParameterDescriptor, getParameterNames, getSupplementalNames, getVerbose, getVersion, handleOperatorExecutionProgressEvent, isConfigured, print, print, print, printInterface, printInterface, readHistory, reinitializeParameterDescriptors, removeOperatorExecutionProgressEventListener, runOp, runOp, runOp, setConstructionMode, setHidingMode, setName, setParameter, setVerbose, toStringVerbose, unconfiguredItems, validate, validateCustom, validateGeneric, writeHistory, writeHistory, writeHistory |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public NeuriteParticleDetector2D() throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
public NeuriteParticleDetector2D(Integer _particleChannel, ParticleDetectorUWT2D _particleDetector, MTBNeurite2DSet _neuriteSet, Boolean _verbose) throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException
_particleChannel
- channel number of particles in the multi-fluorescence image (1
labels first channel)_particleDetector
- detector for particle detection_neuriteSet
- set of neurite regions for detecting particle only inside these
regions, can be null for detection all particles in the complete
image_verbose
- flag for standard console outputs
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
Method Detail |
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public Integer getParticleChannel()
public ParticleDetectorUWT2D getParticleDetector()
public void setParticleImage(MTBImage particleImage)
public MTBNeurite2DSet getNeuriteSet()
public void setNeuriteSet(MTBNeurite2DSet _neuriteSet)
public MTBRegion2DSet getDetectedParticles()
protected void operate() throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException, de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException
operate
in class de.unihalle.informatik.Alida.operator.ALDOperator
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException
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