mitobo-plugins 1.4.2 API

Packages

cmdTools.cellAnalysis
cmdTools.mtb_imagetools
cmdTools.tracking.multitarget
cmdTools.visualization
de.unihalle.informatik.Alida.admin.annotations
de.unihalle.informatik.MiToBo.apps.actinAnalysis	Provides tools and applications for quantifying actin filament structures in microscopy images of cells.
de.unihalle.informatik.MiToBo.apps.cells2D
de.unihalle.informatik.MiToBo.apps.cytoplasm2D
de.unihalle.informatik.MiToBo.apps.datatypes.cellImages
de.unihalle.informatik.MiToBo.apps.neurites2D
de.unihalle.informatik.MiToBo.apps.neurons2D
de.unihalle.informatik.MiToBo.apps.nuclei2D
de.unihalle.informatik.MiToBo.apps.particles2D
de.unihalle.informatik.MiToBo.apps.scratchAssay
de.unihalle.informatik.MiToBo.apps.singleCellTracking2D
de.unihalle.informatik.MiToBo.apps.xylem
de.unihalle.informatik.MiToBo.clustering
de.unihalle.informatik.MiToBo.color.conversion
de.unihalle.informatik.MiToBo.color.visualization
de.unihalle.informatik.MiToBo.core.batch.provider.input.swing
de.unihalle.informatik.MiToBo.core.batch.provider.output.swing
de.unihalle.informatik.MiToBo.core.dataconverter
de.unihalle.informatik.MiToBo.core.dataio
de.unihalle.informatik.MiToBo.core.dataio.provider.cmdline
de.unihalle.informatik.MiToBo.core.dataio.provider.swing
de.unihalle.informatik.MiToBo.core.dataio.provider.swing.components
de.unihalle.informatik.MiToBo.core.dataio.provider.xmlbeans
de.unihalle.informatik.MiToBo.core.datatypes	Provides basic datatypes for MiToBo.
de.unihalle.informatik.MiToBo.core.datatypes.defines
de.unihalle.informatik.MiToBo.core.datatypes.images	Contains MiToBo image data types.
de.unihalle.informatik.MiToBo.core.datatypes.neurites
de.unihalle.informatik.MiToBo.core.datatypes.wrapper	Provides wrapper for for input and output datatypes for MiToBo operators.
de.unihalle.informatik.MiToBo.core.exceptions	Defines MiToBo exceptions.
de.unihalle.informatik.MiToBo.core.grappa
de.unihalle.informatik.MiToBo.core.gui
de.unihalle.informatik.MiToBo.core.helpers
de.unihalle.informatik.MiToBo.core.imageJ	Provides convenience classes for interaction with ImageJ system.
de.unihalle.informatik.MiToBo.core.operator	Provides basis classes for MiToBo operator concept.
de.unihalle.informatik.MiToBo.enhance	Provides classes for image preprocessing and improvement (no filters!).
de.unihalle.informatik.MiToBo.features	Provides operators for calculating features from given images, e.g., statistical indicators or texture measures.
de.unihalle.informatik.MiToBo.features.statistical	Provides operators for calculating statistical image features, e.g., average intensities or variances, or moments of the intensity distribution.
de.unihalle.informatik.MiToBo.features.texture	Provides operators for calculating texture features from given images, e.g., Haralick measures.
de.unihalle.informatik.MiToBo.fields	Provides classes for calculating gradient vector flow fields, image gradient fields, potential fields and other possible fields from different data sources.
de.unihalle.informatik.MiToBo.filters.linear	Provides classes implementing linear systems.
de.unihalle.informatik.MiToBo.filters.linear.anisotropic
de.unihalle.informatik.MiToBo.filters.nonlinear	Provides classes implementing nonlinear image filters.
de.unihalle.informatik.MiToBo.filters.vesselness	Provides various operators for enhancing vessel-like structures in images.
de.unihalle.informatik.MiToBo.gui
de.unihalle.informatik.MiToBo.io.dirs	Provides classes for dealing with directories.
de.unihalle.informatik.MiToBo.io.files	Provides classes for handling (non-)image files.
de.unihalle.informatik.MiToBo.io.images	Provides classes for handling image files.
de.unihalle.informatik.MiToBo.io.tools	Contains helper classes for image I/O.
de.unihalle.informatik.MiToBo.math	Provides mathematical functionality.
de.unihalle.informatik.MiToBo.math.distributions.impl
de.unihalle.informatik.MiToBo.math.distributions.interfaces
de.unihalle.informatik.MiToBo.math.images	Provides mathematical operations on images.
de.unihalle.informatik.MiToBo.math.optimization
de.unihalle.informatik.MiToBo.math.statistics	This package contains oeprators for performing statistical analysis of data sets.
de.unihalle.informatik.MiToBo.morphology	Provides classes for morphological processing of binary images.
de.unihalle.informatik.MiToBo.segmentation.activecontours.datatypes
de.unihalle.informatik.MiToBo.segmentation.activecontours.energies
de.unihalle.informatik.MiToBo.segmentation.activecontours.exceptions
de.unihalle.informatik.MiToBo.segmentation.basics
de.unihalle.informatik.MiToBo.segmentation.contours.extraction	Provides classes for performing contour extractions from regions or other image elements.
de.unihalle.informatik.MiToBo.segmentation.evaluation
de.unihalle.informatik.MiToBo.segmentation.levelset.core
de.unihalle.informatik.MiToBo.segmentation.levelset.core.energies.derivable
de.unihalle.informatik.MiToBo.segmentation.levelset.nonPDE
de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.datatypes
de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.solver
de.unihalle.informatik.MiToBo.segmentation.regions.convert
de.unihalle.informatik.MiToBo.segmentation.regions.filling	Provides operators for filling wholes in binary 2D/3D regions.
de.unihalle.informatik.MiToBo.segmentation.regions.labeling	Provides classes to perform region labeling to find connected components in binarized images.
de.unihalle.informatik.MiToBo.segmentation.regions.mser
de.unihalle.informatik.MiToBo.segmentation.snakes.datatypes	Provides basic datatypes for MiToBo explicit active contours (snakes).
de.unihalle.informatik.MiToBo.segmentation.snakes.energies	Provides classes with energies to be used with MiToBo snakes.
de.unihalle.informatik.MiToBo.segmentation.snakes.energies.paramAdapt	Provides classes with parameter adaptation for energies to be used with MiToBo snakes.
de.unihalle.informatik.MiToBo.segmentation.snakes.optimize	Provides classes for performing snake-based segmentation on images.
de.unihalle.informatik.MiToBo.segmentation.snakes.optimize.stepsize	Provides classes for calculating several update strategies of the snake step size gamma.
de.unihalle.informatik.MiToBo.segmentation.snakes.optimize.termination	Provides classes for calculating several termination strategies of the snake optimization.
de.unihalle.informatik.MiToBo.segmentation.thresholds	Provides classes for thresholding grayscale and color images.
de.unihalle.informatik.MiToBo.tools
de.unihalle.informatik.MiToBo.tools.image
de.unihalle.informatik.MiToBo.tools.strings
de.unihalle.informatik.MiToBo.tools.system
de.unihalle.informatik.MiToBo.topology
de.unihalle.informatik.MiToBo.tracking.multitarget.algo
de.unihalle.informatik.MiToBo.tracking.multitarget.datatools
de.unihalle.informatik.MiToBo.tracking.multitarget.datatypes.abstracts
de.unihalle.informatik.MiToBo.tracking.multitarget.datatypes.impl
de.unihalle.informatik.MiToBo.tracking.multitarget.datatypes.interfaces
de.unihalle.informatik.MiToBo.tracking.multitarget.distributions.abstracts
de.unihalle.informatik.MiToBo.tracking.multitarget.distributions.impl
de.unihalle.informatik.MiToBo.tracking.multitarget.eval
de.unihalle.informatik.MiToBo.transforms
de.unihalle.informatik.MiToBo.visualization.drawing	Provides operators to visualize data types.
de.unihalle.informatik.MiToBo.visualization.plots
mitoboRunner
mtb_io	Provides plugins for MiToBo image I/O.
mtb_segmentation	Provides plugins for image segmentation in general.