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Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages |
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Fields in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages declared as MTBRegion2DSet | |
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protected MTBRegion2DSet |
SegResult_Nuclei.nucleiRegions
Set of detected regions. |
protected MTBRegion2DSet |
SegResult_Particles.particleRegions
List of detected regions. |
Methods in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages that return MTBRegion2DSet | |
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MTBRegion2DSet |
SegResult_Nuclei.getNucleiRegions()
Returns set of detected regions. |
Methods in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages with parameters of type MTBRegion2DSet | |
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void |
SegResult_Nuclei.setNucleiRegions(MTBRegion2DSet regs)
Specify set of regions. |
Constructors in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages with parameters of type MTBRegion2DSet | |
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SegResult_Nuclei(String imgName,
int channel,
MTBImageByte mask,
MTBImage labels,
MTBRegion2DSet regs,
int count,
double avgsize)
Default constructor. |
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SegResult_Particles(String imgName,
int ch,
MTBRegion2DSet regions,
MTBImageByte mask,
int count,
double avgsize)
Default constructor. |
Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.apps.neurites2D |
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Methods in de.unihalle.informatik.MiToBo.apps.neurites2D that return MTBRegion2DSet | |
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MTBRegion2DSet |
NeuriteParticleDetector2D.getDetectedParticles()
Get regions of detected particles. |
Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.apps.nuclei2D |
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Methods in de.unihalle.informatik.MiToBo.apps.nuclei2D that return MTBRegion2DSet | |
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MTBRegion2DSet |
NucleusSeparator2DPeakSearch_RegionSeparator.getCandidates()
Returns set of detected candidate peaks. |
MTBRegion2DSet |
NucleusSeparator2DPeakSearch_RegionSeparator.getInputRegs()
Get set of input regions. |
MTBRegion2DSet |
NucleusSeparator2DPeakSearch.getNRSCandidates()
Returns possible peak locations from NucleusRegionSeperator. |
MTBRegion2DSet[] |
NucleusSeparator2DPeakSearch.getNRSResultAreas()
Returns set of result regions from region separator. |
MTBRegion2DSet |
NucleusSeparator2DPeakSearch.getNRSResultCenters()
Returns set of detected region centers from region separator. |
MTBRegion2DSet |
NuclearParticleDetector2D.getNucleiRegions()
Get detected nuclei regions. |
MTBRegion2DSet |
NucleusSeparator2DPeakSearch.getOtsuRegs()
Returns set of regions resulting from Otsu thresholding. |
MTBRegion2DSet |
NuclearParticleDetector2D.getParticleRegions()
Get detected particle regions. |
MTBRegion2DSet[] |
NucleusSeparator2DPeakSearch_RegionSeparator.getRegCenters()
Returns the centers of the nuclei sorted to their original regions. |
MTBRegion2DSet[] |
NucleusSeparator2DPeakSearch_RegionSeparator.getResultAreas()
Returns separated regions sorted according to original regions. |
MTBRegion2DSet |
NucleusSeparator2DPeakSearch_RegionSeparator.getResultCenters()
Returns centers of result regions. |
Methods in de.unihalle.informatik.MiToBo.apps.nuclei2D with parameters of type MTBRegion2DSet | |
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void |
NucleusSeparator2DPeakSearch_RegionSeparator.setInputRegs(MTBRegion2DSet _inputRegions)
Specify set of input regions. |
Constructors in de.unihalle.informatik.MiToBo.apps.nuclei2D with parameters of type MTBRegion2DSet | |
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NucleusSeparator2DPeakSearch_RegionSeparator(MTBRegion2DSet oset)
Constructor with region set. |
Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.apps.particles2D |
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Methods in de.unihalle.informatik.MiToBo.apps.particles2D that return MTBRegion2DSet | |
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MTBRegion2DSet |
ParticleDetectorUWT2D.getResults()
Get resulting regions (each detetection corresponds to a region) |
Methods in de.unihalle.informatik.MiToBo.apps.particles2D with parameters of type MTBRegion2DSet | |
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protected MTBImage |
ParticleDetectorUWT2D.labelImage(MTBImage img,
MTBRegion2DSet regs)
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protected MTBImage |
ParticleDetectorUWT2D.processedRegionsToBinImage(MTBImage img,
MTBRegion2DSet regs,
int _minRegionSize)
Create a binary image from given regions. |
protected void |
ParticleDetectorUWT2D.setResults(MTBRegion2DSet detectedRegions)
Set detected regions |
Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.apps.singleCellTracking2D |
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Methods in de.unihalle.informatik.MiToBo.apps.singleCellTracking2D that return MTBRegion2DSet | |
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static MTBRegion2DSet |
LabelAreasToRegions.getRegions(MTBImage frame)
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static MTBRegion2DSet |
LabelAreasToRegions.getRegions(MTBImage frame,
int bgLabel)
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Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.core.datatypes |
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Methods in de.unihalle.informatik.MiToBo.core.datatypes that return MTBRegion2DSet | |
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MTBRegion2DSet |
MTBRegion2DSet.clone()
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MTBRegion2DSet |
MTBRegion2DSetBag.get(int idx)
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MTBRegion2DSet |
MTBRegion2DSetBag.remove(int idx)
Remove a region set from this bag by its index |
MTBRegion2DSet |
MTBRegion2DSet.selectLargeRegions(int minSize)
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Methods in de.unihalle.informatik.MiToBo.core.datatypes that return types with arguments of type MTBRegion2DSet | |
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Iterator<MTBRegion2DSet> |
MTBRegion2DSetBag.iterator()
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Methods in de.unihalle.informatik.MiToBo.core.datatypes with parameters of type MTBRegion2DSet | |
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void |
MTBRegion2DSetBag.add(MTBRegion2DSet regionset)
Add a region set to this bag |
boolean |
MTBRegion2DSetBag.remove(MTBRegion2DSet regionset)
Remove a region set from this bag |
void |
MTBRegion2DSetBag.set(int idx,
MTBRegion2DSet regionset)
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Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.core.datatypes.neurites |
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Methods in de.unihalle.informatik.MiToBo.core.datatypes.neurites that return MTBRegion2DSet | |
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MTBRegion2DSet |
MTBNeurite2D.getGrowthConeRegions()
Get regions of the separated growth cones. |
Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.core.imageJ |
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Methods in de.unihalle.informatik.MiToBo.core.imageJ that return MTBRegion2DSet | |
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MTBRegion2DSet |
MTBRegion2DSetROI.getRegionSet()
Get 2D region set from Roi. |
MTBRegion2DSet |
RoiManagerAdapter.getRegionSetFromRoiFile(String file)
Reads an ImageJ roi file into a set of regions. |
MTBRegion2DSet |
RoiManagerAdapter.getRegionSetFromRoiFile(String file,
double xMin,
double yMin,
double xMax,
double yMax)
Reads an ImageJ roi file into a set of regions. |
MTBRegion2DSet |
RoiManagerAdapter.getRegionSetFromRoiManager()
Reads a ROI manager selection into a set of regions. |
Methods in de.unihalle.informatik.MiToBo.core.imageJ with parameters of type MTBRegion2DSet | |
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void |
RoiManagerAdapter.addRegionsToRoiManager(MTBRegion2DSet regs)
Adds a set of 2D regions to the ROI manager. |
Constructors in de.unihalle.informatik.MiToBo.core.imageJ with parameters of type MTBRegion2DSet | |
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MTBRegion2DSetROI(MTBRegion2DSet regSet,
String roiLabel)
Constructor to create a new Roi-Manager-Object, based on a MTBRegion2DSet. |
Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.segmentation.basics |
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Fields in de.unihalle.informatik.MiToBo.segmentation.basics declared as MTBRegion2DSet | |
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protected MTBRegion2DSet |
SegmentationInitializer.regionSet
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Methods in de.unihalle.informatik.MiToBo.segmentation.basics that return MTBRegion2DSet | |
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MTBRegion2DSet |
SegmentationInitializer.getRegionSet()
Get the region set. |
Methods in de.unihalle.informatik.MiToBo.segmentation.basics with parameters of type MTBRegion2DSet | |
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void |
SegmentationInitializer.setRegionSet(MTBRegion2DSet _regionSet)
Set the region set. |
Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.segmentation.contours.extraction |
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Methods in de.unihalle.informatik.MiToBo.segmentation.contours.extraction that return MTBRegion2DSet | |
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MTBRegion2DSet |
ContourOnLabeledComponents.getInputRegions()
Get reference to the input regions. |
Methods in de.unihalle.informatik.MiToBo.segmentation.contours.extraction with parameters of type MTBRegion2DSet | |
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protected MTBContour2DSet |
ContourOnLabeledComponents.getOuterContours(MTBRegion2DSet theRegions,
MTBImageByte theImage)
Calculate the outer contours of the given regions in a image. |
void |
ContourOnLabeledComponents.setInputRegions(MTBRegion2DSet inRegions)
Set reference to the the input regions. |
void |
BordersOnLabeledComponents.setInputRegions(MTBRegion2DSet inRegions)
Set input regions. |
Constructors in de.unihalle.informatik.MiToBo.segmentation.contours.extraction with parameters of type MTBRegion2DSet | |
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BordersOnLabeledComponents(MTBImageByte inImg,
MTBRegion2DSet inRegions,
MTBBorder2D.BorderConnectivity con,
BordersOnLabeledComponents.BorderType type,
int minLength)
Constructor. |
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ContourOnLabeledComponents(MTBImageByte inImg,
MTBRegion2DSet inRegions,
ContourOnLabeledComponents.ContourType type,
int length)
Constructor. |
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ContourOnLabeledComponents(MTBRegion2DSet inRegions,
ContourOnLabeledComponents.ContourType type,
int length)
Constructor. |
Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.segmentation.levelset.nonPDE |
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Constructors in de.unihalle.informatik.MiToBo.segmentation.levelset.nonPDE with parameters of type MTBRegion2DSet | |
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MTBLevelsetMembership(int sizeX,
int sizeY,
MTBRegion2DSet regions,
MTBImage invalidImg,
boolean multiphase)
Constructor for given size which is initialized from a MTBRegion2DSet for a 2D level set function. |
Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.segmentation.regions.convert |
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Methods in de.unihalle.informatik.MiToBo.segmentation.regions.convert that return MTBRegion2DSet | |
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MTBRegion2DSet |
Region2DSetFromLabelimage.getRegionSet()
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Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.segmentation.regions.labeling |
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Methods in de.unihalle.informatik.MiToBo.segmentation.regions.labeling that return MTBRegion2DSet | |
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MTBRegion2DSet |
LabelComponentsSequential.getResultingRegions()
Get the resulting regions. |
protected MTBRegion2DSet |
LabelComponentsSequential.labelComponents(MTBImage img,
boolean diagonalNeighbors)
Sequential component labeling |
Methods in de.unihalle.informatik.MiToBo.segmentation.regions.labeling with parameters of type MTBRegion2DSet | |
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protected void |
LabelComponentsSequential.setResultingRegions(MTBRegion2DSet regions)
Attach the vector of resulting regions. |
Uses of MTBRegion2DSet in de.unihalle.informatik.MiToBo.visualization.drawing |
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Methods in de.unihalle.informatik.MiToBo.visualization.drawing that return MTBRegion2DSet | |
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MTBRegion2DSet |
DrawRegion2DSet.getInputRegions()
Get the regions that have to be drawn |
Methods in de.unihalle.informatik.MiToBo.visualization.drawing with parameters of type MTBRegion2DSet | |
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void |
DrawRegion2DSet.setInputRegions(MTBRegion2DSet regions)
Set the input regions to be drawn |
Constructors in de.unihalle.informatik.MiToBo.visualization.drawing with parameters of type MTBRegion2DSet | |
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DrawRegion2DSet(DrawRegion2DSet.DrawType dtype,
MTBRegion2DSet regions)
Simple constructor to create the most common region image types: see DrawType |
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DrawRegion2DSet(DrawRegion2DSet.DrawType dtype,
MTBRegion2DSet regions,
Boolean cloneTargetImage)
Simple constructor to create the most common region image types: see DrawType |
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DrawRegion2DSet(DrawRegion2DSet.DrawType dtype,
MTBRegion2DSet regions,
MTBImage targetimage)
Simple constructor to draw the most common region image types to a given image: |
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