Uses of Class
de.unihalle.informatik.MiToBo.core.datatypes.images.MTBImageRGB

Packages that use MTBImageRGB
de.unihalle.informatik.MiToBo.apps.cytoplasm2D   
de.unihalle.informatik.MiToBo.apps.datatypes.cellImages   
de.unihalle.informatik.MiToBo.apps.nuclei2D   
de.unihalle.informatik.MiToBo.apps.particles2D   
de.unihalle.informatik.MiToBo.color.conversion   
de.unihalle.informatik.MiToBo.color.visualization   
de.unihalle.informatik.MiToBo.core.datatypes Provides basic datatypes for MiToBo. 
de.unihalle.informatik.MiToBo.core.datatypes.neurites   
de.unihalle.informatik.MiToBo.fields Provides classes for calculating gradient vector flow fields, image gradient fields, potential fields and other possible fields from different data sources. 
de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.datatypes   
de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.solver   
de.unihalle.informatik.MiToBo.segmentation.snakes.optimize Provides classes for performing snake-based segmentation on images. 
de.unihalle.informatik.MiToBo.visualization.drawing Provides operators to visualize data types. 
 

Uses of MTBImageRGB in de.unihalle.informatik.MiToBo.apps.cytoplasm2D
 

Fields in de.unihalle.informatik.MiToBo.apps.cytoplasm2D declared as MTBImageRGB
protected  MTBImageRGB CytoplasmAnalyzer2D.resultImage
          Result segmentation image.
 

Uses of MTBImageRGB in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages
 

Fields in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages declared as MTBImageRGB
protected  MTBImageRGB SegResult_Cytoplasm.resultCellImg
          Input image with snake contours overlayed (optional).
protected  MTBImageRGB SegResult_Complete.resultImageStack
          (Optional) stack of result images with segmentation masks/overlays.
 

Methods in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages that return MTBImageRGB
 MTBImageRGB SegResult_Cytoplasm.getResultCellImg()
          Returns (optional) result image with cell contours.
 MTBImageRGB SegResult_Complete.getResultImageStack()
          Returns stack with result segmentation images.
 

Methods in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages with parameters of type MTBImageRGB
 void SegResult_Cytoplasm.setResultCellImg(MTBImageRGB img)
          Specify (optional) result image with cell contours.
 void SegResult_Complete.setResultImageStack(MTBImageRGB stack)
          Set stack with result segmentation images.
 

Uses of MTBImageRGB in de.unihalle.informatik.MiToBo.apps.nuclei2D
 

Methods in de.unihalle.informatik.MiToBo.apps.nuclei2D that return MTBImageRGB
 MTBImageRGB NucleusSeparator2DPeakSearch.getResultImage()
          Returns RGB color image overlayed with nuclei contours.
 

Uses of MTBImageRGB in de.unihalle.informatik.MiToBo.apps.particles2D
 

Methods in de.unihalle.informatik.MiToBo.apps.particles2D that return MTBImageRGB
 MTBImageRGB MultiChannelParticleAnalyzer2D.getResultImage()
          Returns result image, i.e. the segmentation mask.
 

Uses of MTBImageRGB in de.unihalle.informatik.MiToBo.color.conversion
 

Methods in de.unihalle.informatik.MiToBo.color.conversion that return MTBImageRGB
 MTBImageRGB RGBToHSXConverter.getInputMTBImgRGB()
          Returns the input image, null if not set.
 

Methods in de.unihalle.informatik.MiToBo.color.conversion with parameters of type MTBImageRGB
 void RGBToHSXConverter.setInputMTBImgRGB(MTBImageRGB inputImage)
          Set the input image.
 

Constructors in de.unihalle.informatik.MiToBo.color.conversion with parameters of type MTBImageRGB
RGBToHSXConverter(MTBImageRGB image)
          Constructor.
 

Uses of MTBImageRGB in de.unihalle.informatik.MiToBo.color.visualization
 

Fields in de.unihalle.informatik.MiToBo.color.visualization declared as MTBImageRGB
protected  MTBImageRGB ArrayToColorMapImage.targetImage
          Optional target image for result.
 

Methods in de.unihalle.informatik.MiToBo.color.visualization that return MTBImageRGB
 MTBImageRGB ArrayToColorMapImage.getResultImage()
          Returns the result color image.
 

Methods in de.unihalle.informatik.MiToBo.color.visualization with parameters of type MTBImageRGB
 void ArrayToColorMapImage.setTargetImage(MTBImageRGB tImage)
          Set target image.
 

Uses of MTBImageRGB in de.unihalle.informatik.MiToBo.core.datatypes
 

Methods in de.unihalle.informatik.MiToBo.core.datatypes that return MTBImageRGB
 MTBImageRGB MTBNeuriteSkelGraph.toImage()
          Visualize the skeleton graph as RGB image.
 MTBImageRGB MTBNeuriteSkelGraph.toImage(MTBImageRGB rgbImage)
          Draw the skeleton graph in the given RGB image.
 

Methods in de.unihalle.informatik.MiToBo.core.datatypes with parameters of type MTBImageRGB
 MTBImageRGB MTBNeuriteSkelGraph.toImage(MTBImageRGB rgbImage)
          Draw the skeleton graph in the given RGB image.
 

Uses of MTBImageRGB in de.unihalle.informatik.MiToBo.core.datatypes.neurites
 

Methods in de.unihalle.informatik.MiToBo.core.datatypes.neurites that return MTBImageRGB
 MTBImageRGB MTBNeurite2DSet.getNeuriteImage(Color regionColor)
          Visualize the neurites skeleton graphs and regions.
 MTBImageRGB MTBNeurite2DProfile.getVoronoiImg()
          Get voronoi tesselation image.
 MTBImageRGB MTBNeurite2D.toImage(Color regionColor)
          Visualize the neurites skeleton graph as RGB image.
 MTBImageRGB MTBNeurite2D.toImage(MTBImageRGB rgbImage, Color regionColor)
          Visualize the neurites skeleton graph in the given RGB image.
 

Methods in de.unihalle.informatik.MiToBo.core.datatypes.neurites with parameters of type MTBImageRGB
 void MTBNeurite2DProfile.setVoronoiImg(MTBImageRGB voronoiImg)
          Specify an image to be filled with voronoi data.
 MTBImageRGB MTBNeurite2D.toImage(MTBImageRGB rgbImage, Color regionColor)
          Visualize the neurites skeleton graph in the given RGB image.
 

Constructors in de.unihalle.informatik.MiToBo.core.datatypes.neurites with parameters of type MTBImageRGB
MTBNeurite2DProfile(MTBNeurite2D _neurite, double[] _profile, Vector<Vector<Point2D.Double>> _profilePoints, MTBImageRGB _voronoiImg)
          Constructor to create a new MTBNeuriteProfile object from the given MTBRegion2D.
 

Uses of MTBImageRGB in de.unihalle.informatik.MiToBo.fields
 

Methods in de.unihalle.informatik.MiToBo.fields that return MTBImageRGB
protected  MTBImageRGB FieldOperations2D.colorPlot()
           Plots the field in colored image.
 

Uses of MTBImageRGB in de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.datatypes
 

Methods in de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.datatypes that return MTBImageRGB
 MTBImageRGB MTBLevelsetFunctionPDE.getPhiColorImage2D(MTBImageRGB targetImg)
          Get visualization of current level set function in red-blue color map.
 

Methods in de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.datatypes with parameters of type MTBImageRGB
 MTBImageRGB MTBLevelsetFunctionPDE.getPhiColorImage2D(MTBImageRGB targetImg)
          Get visualization of current level set function in red-blue color map.
 

Uses of MTBImageRGB in de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.solver
 

Fields in de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.solver declared as MTBImageRGB
protected  MTBImageRGB LevelsetSolverPDE.intermediatePhiColorImage
          Color image to visualize intermediate segmentation results.
protected  MTBImageRGB LevelsetSolverPDE.resultImage
           
 

Methods in de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.solver that return MTBImageRGB
 MTBImageRGB LevelsetSolverPDE.getResultImage()
          Get image with segmentation result overlay.
 

Uses of MTBImageRGB in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize
 

Fields in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize declared as MTBImageRGB
protected  MTBImageRGB SnakeOptimizerSingle.dispImg
          Image for showing/saving intermediate results.
protected  MTBImageRGB SnakeOptimizerCoupled.dispImg
          Image for displaying intermediate/final results.
protected  MTBImageRGB SnakeOptimizer.outIntermediateResultsStack
          Image stack with intermediate result images.
protected  MTBImageRGB SnakeOptimizer.outSnakesImg
          Image with final snake contours overlayed.
 

Methods in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize that return MTBImageRGB
 MTBImageRGB SnakeOptimizer.getResultSnakeImage()
          Returns image with snakes contours.
 MTBImageRGB SnakeOptimizer.getStackWithIntermediateResults()
          Returns a stack with intermediate segmentation results.
 

Methods in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize with parameters of type MTBImageRGB
protected  void SnakeOptimizerCoupled.plotSnakeToImage(MTBImageRGB img)
           
 

Uses of MTBImageRGB in de.unihalle.informatik.MiToBo.visualization.drawing
 

Constructors in de.unihalle.informatik.MiToBo.visualization.drawing with parameters of type MTBImageRGB
DrawPolygon2DSet(MTBPolygon2DSet ps, MTBImageRGB img)
          Complete constructor.
 



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