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mitobo-plugins 1.4.2 API
Packages
cmdTools.cellAnalysis
cmdTools.mtb_imagetools
cmdTools.tracking.multitarget
cmdTools.visualization
de.unihalle.informatik.Alida.admin.annotations
de.unihalle.informatik.MiToBo.apps.actinAnalysis
Provides tools and applications for quantifying actin filament structures in microscopy images of cells.
de.unihalle.informatik.MiToBo.apps.cells2D
de.unihalle.informatik.MiToBo.apps.cytoplasm2D
de.unihalle.informatik.MiToBo.apps.datatypes.cellImages
de.unihalle.informatik.MiToBo.apps.neurites2D
de.unihalle.informatik.MiToBo.apps.neurons2D
de.unihalle.informatik.MiToBo.apps.nuclei2D
de.unihalle.informatik.MiToBo.apps.particles2D
de.unihalle.informatik.MiToBo.apps.scratchAssay
de.unihalle.informatik.MiToBo.apps.singleCellTracking2D
de.unihalle.informatik.MiToBo.apps.xylem
de.unihalle.informatik.MiToBo.clustering
de.unihalle.informatik.MiToBo.color.conversion
de.unihalle.informatik.MiToBo.color.visualization
de.unihalle.informatik.MiToBo.core.batch.provider.input.swing
de.unihalle.informatik.MiToBo.core.batch.provider.output.swing
de.unihalle.informatik.MiToBo.core.dataconverter
de.unihalle.informatik.MiToBo.core.dataio
de.unihalle.informatik.MiToBo.core.dataio.provider.cmdline
de.unihalle.informatik.MiToBo.core.dataio.provider.swing
de.unihalle.informatik.MiToBo.core.dataio.provider.swing.components
de.unihalle.informatik.MiToBo.core.dataio.provider.xmlbeans
de.unihalle.informatik.MiToBo.core.datatypes
Provides basic datatypes for MiToBo.
de.unihalle.informatik.MiToBo.core.datatypes.defines
de.unihalle.informatik.MiToBo.core.datatypes.images
Contains MiToBo image data types.
de.unihalle.informatik.MiToBo.core.datatypes.neurites
de.unihalle.informatik.MiToBo.core.datatypes.wrapper
Provides wrapper for for input and output datatypes for MiToBo operators.
de.unihalle.informatik.MiToBo.core.exceptions
Defines MiToBo exceptions.
de.unihalle.informatik.MiToBo.core.grappa
de.unihalle.informatik.MiToBo.core.gui
de.unihalle.informatik.MiToBo.core.helpers
de.unihalle.informatik.MiToBo.core.imageJ
Provides convenience classes for interaction with ImageJ system.
de.unihalle.informatik.MiToBo.core.operator
Provides basis classes for MiToBo operator concept.
de.unihalle.informatik.MiToBo.enhance
Provides classes for image preprocessing and improvement (no filters!).
de.unihalle.informatik.MiToBo.features
Provides operators for calculating features from given images, e.g., statistical indicators or texture measures.
de.unihalle.informatik.MiToBo.features.statistical
Provides operators for calculating statistical image features, e.g., average intensities or variances, or moments of the intensity distribution.
de.unihalle.informatik.MiToBo.features.texture
Provides operators for calculating texture features from given images, e.g., Haralick measures.
de.unihalle.informatik.MiToBo.fields
Provides classes for calculating gradient vector flow fields, image gradient fields, potential fields and other possible fields from different data sources.
de.unihalle.informatik.MiToBo.filters.linear
Provides classes implementing linear systems.
de.unihalle.informatik.MiToBo.filters.linear.anisotropic
de.unihalle.informatik.MiToBo.filters.nonlinear
Provides classes implementing nonlinear image filters.
de.unihalle.informatik.MiToBo.filters.vesselness
Provides various operators for enhancing vessel-like structures in images.
de.unihalle.informatik.MiToBo.gui
de.unihalle.informatik.MiToBo.io.dirs
Provides classes for dealing with directories.
de.unihalle.informatik.MiToBo.io.files
Provides classes for handling (non-)image files.
de.unihalle.informatik.MiToBo.io.images
Provides classes for handling image files.
de.unihalle.informatik.MiToBo.io.tools
Contains helper classes for image I/O.
de.unihalle.informatik.MiToBo.math
Provides mathematical functionality.
de.unihalle.informatik.MiToBo.math.distributions.impl
de.unihalle.informatik.MiToBo.math.distributions.interfaces
de.unihalle.informatik.MiToBo.math.images
Provides mathematical operations on images.
de.unihalle.informatik.MiToBo.math.optimization
de.unihalle.informatik.MiToBo.math.statistics
This package contains oeprators for performing statistical analysis of data sets.
de.unihalle.informatik.MiToBo.morphology
Provides classes for morphological processing of binary images.
de.unihalle.informatik.MiToBo.segmentation.activecontours.datatypes
de.unihalle.informatik.MiToBo.segmentation.activecontours.energies
de.unihalle.informatik.MiToBo.segmentation.activecontours.exceptions
de.unihalle.informatik.MiToBo.segmentation.basics
de.unihalle.informatik.MiToBo.segmentation.contours.extraction
Provides classes for performing contour extractions from regions or other image elements.
de.unihalle.informatik.MiToBo.segmentation.evaluation
de.unihalle.informatik.MiToBo.segmentation.levelset.core
de.unihalle.informatik.MiToBo.segmentation.levelset.core.energies.derivable
de.unihalle.informatik.MiToBo.segmentation.levelset.nonPDE
de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.datatypes
de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.solver
de.unihalle.informatik.MiToBo.segmentation.regions.convert
de.unihalle.informatik.MiToBo.segmentation.regions.filling
Provides operators for filling wholes in binary 2D/3D regions.
de.unihalle.informatik.MiToBo.segmentation.regions.labeling
Provides classes to perform region labeling to find connected components in binarized images.
de.unihalle.informatik.MiToBo.segmentation.regions.mser
de.unihalle.informatik.MiToBo.segmentation.snakes.datatypes
Provides basic datatypes for MiToBo explicit active contours (snakes).
de.unihalle.informatik.MiToBo.segmentation.snakes.energies
Provides classes with energies to be used with MiToBo snakes.
de.unihalle.informatik.MiToBo.segmentation.snakes.energies.paramAdapt
Provides classes with parameter adaptation for energies to be used with MiToBo snakes.
de.unihalle.informatik.MiToBo.segmentation.snakes.optimize
Provides classes for performing snake-based segmentation on images.
de.unihalle.informatik.MiToBo.segmentation.snakes.optimize.stepsize
Provides classes for calculating several update strategies of the snake step size gamma.
de.unihalle.informatik.MiToBo.segmentation.snakes.optimize.termination
Provides classes for calculating several termination strategies of the snake optimization.
de.unihalle.informatik.MiToBo.segmentation.thresholds
Provides classes for thresholding grayscale and color images.
de.unihalle.informatik.MiToBo.tools
de.unihalle.informatik.MiToBo.tools.image
de.unihalle.informatik.MiToBo.tools.strings
de.unihalle.informatik.MiToBo.tools.system
de.unihalle.informatik.MiToBo.topology
de.unihalle.informatik.MiToBo.tracking.multitarget.algo
de.unihalle.informatik.MiToBo.tracking.multitarget.datatools
de.unihalle.informatik.MiToBo.tracking.multitarget.datatypes.abstracts
de.unihalle.informatik.MiToBo.tracking.multitarget.datatypes.impl
de.unihalle.informatik.MiToBo.tracking.multitarget.datatypes.interfaces
de.unihalle.informatik.MiToBo.tracking.multitarget.distributions.abstracts
de.unihalle.informatik.MiToBo.tracking.multitarget.distributions.impl
de.unihalle.informatik.MiToBo.tracking.multitarget.eval
de.unihalle.informatik.MiToBo.transforms
de.unihalle.informatik.MiToBo.visualization.drawing
Provides operators to visualize data types.
de.unihalle.informatik.MiToBo.visualization.plots
mitoboRunner
mtb_io
Provides plugins for MiToBo image I/O.
mtb_segmentation
Provides plugins for image segmentation in general.
Overview
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Copyright © 2010–2015
Martin Luther University Halle-Wittenberg
. All rights reserved.