Uses of Class
de.unihalle.informatik.MiToBo.core.datatypes.MTBPolygon2DSet

Packages that use MTBPolygon2DSet
de.unihalle.informatik.MiToBo.apps.cells2D   
de.unihalle.informatik.MiToBo.apps.cytoplasm2D   
de.unihalle.informatik.MiToBo.apps.datatypes.cellImages   
de.unihalle.informatik.MiToBo.apps.nuclei2D   
de.unihalle.informatik.MiToBo.core.datatypes Provides basic datatypes for MiToBo. 
de.unihalle.informatik.MiToBo.core.imageJ Provides convenience classes for interaction with ImageJ system. 
de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.solver   
de.unihalle.informatik.MiToBo.segmentation.snakes.datatypes Provides basic datatypes for MiToBo explicit active contours (snakes). 
de.unihalle.informatik.MiToBo.segmentation.snakes.optimize Provides classes for performing snake-based segmentation on images. 
de.unihalle.informatik.MiToBo.visualization.drawing Provides operators to visualize data types. 
 

Uses of MTBPolygon2DSet in de.unihalle.informatik.MiToBo.apps.cells2D
 

Methods in de.unihalle.informatik.MiToBo.apps.cells2D with parameters of type MTBPolygon2DSet
 void Mica2D.setInitialSnakes(MTBPolygon2DSet f)
          Specify set of initial snakes.
 

Uses of MTBPolygon2DSet in de.unihalle.informatik.MiToBo.apps.cytoplasm2D
 

Fields in de.unihalle.informatik.MiToBo.apps.cytoplasm2D declared as MTBPolygon2DSet
protected  MTBPolygon2DSet CytoplasmAnalyzer2D.currentSnakes
          Current set of snakes.
protected  MTBPolygon2DSet CytoplasmAnalyzer2D.initialSnakes
          Initial snakes for cells, e.g. nuclei contours.
protected  MTBPolygon2DSet CytoplasmAnalyzer2D.resultSnakes
           
 

Methods in de.unihalle.informatik.MiToBo.apps.cytoplasm2D with parameters of type MTBPolygon2DSet
 void CytoplasmAnalyzer2D.setInitialSnakes(MTBPolygon2DSet snakes)
          Specify initial snakes.
 

Constructors in de.unihalle.informatik.MiToBo.apps.cytoplasm2D with parameters of type MTBPolygon2DSet
CytoplasmAnalyzer2D(MTBImage img, MTBPolygon2DSet initS, SnakeOptimizerCoupled snakeObj, CytoplasmAnalyzer2D.DetectMode m, int _maxLevels)
          Default constructor.
 

Uses of MTBPolygon2DSet in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages
 

Fields in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages declared as MTBPolygon2DSet
protected  MTBPolygon2DSet SegResult_Cytoplasm.cellContours
          Set of detected cell boundaries.
 

Methods in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages that return MTBPolygon2DSet
 MTBPolygon2DSet SegResult_Cytoplasm.getContours()
          Returns extracted contours.
 

Constructors in de.unihalle.informatik.MiToBo.apps.datatypes.cellImages with parameters of type MTBPolygon2DSet
SegResult_Cytoplasm(String imgName, MTBPolygon2DSet conts, MTBImageByte labels, int count, double avgsize)
          Deprecated. 
SegResult_Cytoplasm(String imgName, MTBPolygon2DSet conts, MTBImageByte labels, int count, int[] sizes, double avgsize)
          Default constructor.
 

Uses of MTBPolygon2DSet in de.unihalle.informatik.MiToBo.apps.nuclei2D
 

Methods in de.unihalle.informatik.MiToBo.apps.nuclei2D that return MTBPolygon2DSet
 MTBPolygon2DSet NucleusSeparator2DPeakSearch_RegionSeparator.getEllipsoidSnakePrimer()
          Returns set of initial snake ellipses.
 MTBPolygon2DSet NucleusSeparator2DPeakSearch.getNRSEllipsoidSnakePrimer()
          Creates and returns a set of polygons as starting regions for snake analysis based on hypothesized ellipses from nucleus information
 MTBPolygon2DSet NucleusSeparator2DPeakSearch.getNRSVoronoidSnakePrimer()
          Creates and returns a set of polygons as starting regions for the snakes.
 MTBPolygon2DSet NucleusSeparator2DPeakSearch.getSnakes()
          Returns the result snakes.
 MTBPolygon2DSet NucleusSeparator2DPeakSearch_RegionSeparator.getVoronoidSnakePrimer()
          Returns set of snake polygons resulting from Voronoi tesselation.
 

Uses of MTBPolygon2DSet in de.unihalle.informatik.MiToBo.core.datatypes
 

Methods in de.unihalle.informatik.MiToBo.core.datatypes that return MTBPolygon2DSet
 MTBPolygon2DSet MTBPolygon2DSet.clone()
           
 

Uses of MTBPolygon2DSet in de.unihalle.informatik.MiToBo.core.imageJ
 

Methods in de.unihalle.informatik.MiToBo.core.imageJ that return MTBPolygon2DSet
 MTBPolygon2DSet MTBPolygon2DSetROI.getPolygonSet()
          Get 2D polygon set from Roi.
 MTBPolygon2DSet RoiManagerAdapter.getPolygonSetFromRoiFile(String file, boolean asSnakes)
          Reads an ImageJ roi file into a set of polygons/snakes.
 MTBPolygon2DSet RoiManagerAdapter.getPolygonSetFromRoiManager()
          Reads ROI manager selections into a set of polygons/snakes.
 

Methods in de.unihalle.informatik.MiToBo.core.imageJ with parameters of type MTBPolygon2DSet
 void RoiManagerAdapter.addPolygonsToRoiManager(MTBPolygon2DSet polys)
          Adds a set of polygons to the ROI manager.
 

Constructors in de.unihalle.informatik.MiToBo.core.imageJ with parameters of type MTBPolygon2DSet
MTBPolygon2DSetROI(MTBPolygon2DSet polySet, String roiLabel)
          Constructor to create a new Roi-Manager-Object, based on a MTBPolygon2DSet.
 

Uses of MTBPolygon2DSet in de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.solver
 

Fields in de.unihalle.informatik.MiToBo.segmentation.levelset.PDE.solver declared as MTBPolygon2DSet
protected  MTBPolygon2DSet LevelsetSolverPDE.invisibleRegionSet
           
 

Uses of MTBPolygon2DSet in de.unihalle.informatik.MiToBo.segmentation.snakes.datatypes
 

Methods in de.unihalle.informatik.MiToBo.segmentation.snakes.datatypes that return MTBPolygon2DSet
static MTBPolygon2DSet MTBSnake.convertRegionsToSnakes(MTBImage image)
          Converts the regions of a label/binary image into a set of snakes.
 

Uses of MTBPolygon2DSet in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize
 

Fields in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize declared as MTBPolygon2DSet
protected  MTBPolygon2DSet SnakeOptimizer.initialSnakes
          Set of initial snake contours.
protected  MTBPolygon2DSet SnakeOptimizer.outSnakes
          Result contours.
 

Fields in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize with type parameters of type MTBPolygon2DSet
protected  Vector<MTBPolygon2DSet> SnakeOptimizer.intermediateResults
          Set of intermediate segmentation results, required for stack generation.
 

Methods in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize that return MTBPolygon2DSet
 MTBPolygon2DSet SnakeOptimizerSingle.getCurrentSnakes()
          Returns a set with current snake(!).
 MTBPolygon2DSet SnakeOptimizerCoupled.getCurrentSnakes()
          Returns a copy of the set of current snakes.
abstract  MTBPolygon2DSet SnakeOptimizer.getCurrentSnakes()
          Returns a copy of the current snake(s).
 MTBPolygon2DSet SnakeOptimizer.getInitialSnakes()
          Returns initial snake.
 MTBPolygon2DSet SnakeOptimizer.getResultSnakes()
          Returns the set of result snakes.
 

Methods in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize with parameters of type MTBPolygon2DSet
 void SnakeOptimizer.setInitialSnakes(MTBPolygon2DSet inS)
          Specify initial snakes.
 

Constructors in de.unihalle.informatik.MiToBo.segmentation.snakes.optimize with parameters of type MTBPolygon2DSet
SnakeOptimizerCoupled(MTBImage img, MTBPolygon2DSet initSnakes, SnakeOptimizerSingle sopt, boolean[] activeArray)
          Default constructor.
SnakeOptimizerSingleVarCalc(MTBImage img, MTBPolygon2DSet initSnake, MTBSet_SnakeEnergyDerivable energs, MTBGammaUpdate gamUpdater, Double gammas, MTBTermination tc, Boolean resample, Double segLength)
          Default constructor with parameters.
 

Uses of MTBPolygon2DSet in de.unihalle.informatik.MiToBo.visualization.drawing
 

Constructors in de.unihalle.informatik.MiToBo.visualization.drawing with parameters of type MTBPolygon2DSet
DrawPolygon2DSet(MTBPolygon2DSet ps)
          Simple constructor.
DrawPolygon2DSet(MTBPolygon2DSet ps, MTBImageRGB img)
          Complete constructor.
 



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