Institute of Computer Science Pattern Recognition and Bioinformatics

adbI.bib

@BOOK{Gusfield97,
  AUTHOR = {Dan Gusfield},
  TITLE = {Algorithms on Strings, Trees and Sequences: Computer Science and Computational Biology},
  YEAR = {1997},
  PUBLISHER = {Cambridge University Press},
  ADDRESS = {Cambridge},
  KEYWORDS = {bioinformatics, textbook}
}

@BOOK{Setubal97,
  AUTHOR = {Joao Setubal  and Joao Meidanis},
  TITLE = {Introduction to Computational Molecular Biology},
  YEAR = {1997},
  PUBLISHER = {PWS Publishing},
  ADDRESS = {Boston, Mass.},
  KEYWORDS = {bioinformatics, textbook}
}

@BOOKLET{Kurtz01:skript,
  AUTHOR = {Stefan Kurtz},
  TITLE = {Foundations of Sequence Analysis},
  NOTE = {Lecture notes for a course in the Winter Semester 2000/2001},
  YEAR = {2001},
  MONTH = {July},
  HOWPUBLISHED = {University of Bielefeld},
  URL = {http://www.techfak.uni-bielefeld.de/techfak/persons/kurtz/PS/GSA.ps.gz},
  KEYWORDS = {bioinformatics, sequences}
}

@ARTICLE{kurtz99reducing,
  AUTHOR = {Stefan Kurtz},
  TITLE = {Reducing the space requirement of suffix trees},
  JOURNAL = {Software - Practice and Experience},
  VOLUME = {29},
  NUMBER = {13},
  PAGES = {1149-1171},
  YEAR = {1999},
  URL = {citeseer.nj.nec.com/kurtz98reducing.html}
}

@BOOK{Waterman95,
  AUTHOR = {Michael S. Waterman},
  TITLE = {Introduction to Computational Biology: Maps, Sequences and Genomes},
  YEAR = {1995},
  PUBLISHER = {Chapman {\&} Hall},
  ADDRESS = {London},
  KEYWORDS = {bioinformatics, textbook}
}

@BOOK{Boeckenhauer03:bongartz,
  AUTHOR = {Hans-Joachim B{\"o}ckenhauer and Dirk Bongartz},
  TITLE = {Algorithmische Grundlagen der Bioinformatik},
  PUBLISHER = {Teubner},
  YEAR = {2003},
  CITY = {Suttgart}
}

@ARTICLE{Altschul:blast:jmb90,
  AUTHOR = {Stephen F. Altschul and Warren Gish and Webb Miller and Eugene W. Myers and David J. Lipman},
  TITLE = {Basic Local Alignment Search Tool},
  JOURNAL = JMB,
  YEAR = {1990},
  VOLUME = {215},
  PAGES = {403-410}
}

@ARTICLE{Altschul97:psiblast,
  AUTHOR = {Stephen F. Altschul and Thomas L. Madden and Alejandro A. Sch{\"a}ffer and Jinghui Zhang and Zheng Zhang and Webb Miller abd Dvid J. Lipman},
  TITLE = {Gapped {BLAST} and {PSI-BLAST}: a new generation of protein databse search programs},
  JOURNAL = {Nucleic Acids Research},
  YEAR = {1997},
  VOLUME = {25},
  NUMBER = {17},
  PAGES = {2289-3402},
  KEYWORDS = {bioinformatics, pathways},
  URL = {file:///home/posch/opub/Bioinf/array2/transpath-nar.pdf}
}

@ARTICLE{ABO:KUR:OHL:2004,
  AUTHOR = {{Abouelhoda, M.I. and Kurtz, S. and Ohlebusch, E.}},
  TITLE = {{Replacing Suffix Trees with Enhanced Suffix Arrays}},
  JOURNAL = {{Journal of Discrete Algorithms}},
  VOLUME = {{2}},
  PAGES = {53-86},
  YEAR = 2004,
  URL = {http://www.zbh.uni-hamburg.de/staff/kurtz/papers/AboKurOhl2004.pdf}
}

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